OpenMS
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Filters the top Peaks in the given spectra according to a given schema/thresholdset
pot. predecessor tools | → SpectraFilter → | pot. successor tools |
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PeakPickerWavelet | any tool operating on MS peak data (in mzML format) |
The command line parameters of this tool are:
SpectraFilterBernNorm -- Applies thresholdfilter to peak spectra. Full documentation: http://www.openms.de/doxygen/release/3.0.0/html/TOPP_SpectraFilterBernNorm.html Version: 3.0.0 Jul 14 2023, 11:57:33, Revision: be787e9 To cite OpenMS: + Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959. Usage: SpectraFilterBernNorm <options> This tool has algorithm parameters that are not shown here! Please check the ini file for a detailed descript ion or use the --helphelp option Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzML') -out <file>* Output file (valid formats: 'mzML') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced) The following configuration subsections are valid: - algorithm Algorithm parameter subsection. You can write an example INI file using the '-write_ini' option. Documentation of subsection parameters can be found in the doxygen documentation or the INIFileEditor. For more information, please consult the online documentation for this tool: - http://www.openms.de/doxygen/release/3.0.0/html/TOPP_SpectraFilterBernNorm.html
INI file documentation of this tool: