ExperimentalDesignFile.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg, Lukas Zimmermann $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
 
#include <map>
#include <set>
 
namespace OpenMS
{
  class ExperimentalDesign;
  class TextFile; 
  class OPENMS_DLLAPI ExperimentalDesignFile
  {
    public:
 
    static ExperimentalDesign load(const std::string& tsv_file, bool require_spectra_files);
 
    static ExperimentalDesign load(const TextFile& text_file, const bool require_spectra_file, std::string filename);
 
    private:
    static bool isOneTableFile_(const TextFile& text_file);
    static ExperimentalDesign parseOneTableFile_(const TextFile& text_file, const std::string& tsv_file, bool require_spectra_file);
    static ExperimentalDesign parseTwoTableFile_(const TextFile& text_file, const std::string& tsv_file, bool require_spectra_file);
    static void parseHeader_(
      const StringList &header,
      const std::string &filename,
      std::map <std::string, Size> &column_map,
      const std::set <std::string> &required,
      const std::set <std::string> &optional,
      bool allow_other_header);
 
    static void parseErrorIf_(const bool test, const std::string &filename, const std::string &message);
  };
}