FIAMSScheduler.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
// 
// --------------------------------------------------------------------------
// $Maintainer: Svetlana Kutuzova, Douglas McCloskey $
// $Authors: Svetlana Kutuzova, Douglas McCloskey $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/FORMAT/CsvFile.h>
#include <map>
 
namespace OpenMS
{
class MzMLFile;
class OPENMS_DLLAPI FIAMSScheduler
  {
public:
    FIAMSScheduler() = default;
 
    FIAMSScheduler(
      std::string filename,
      std::string base_dir = "/",
      std::string output_dir = "/",
      bool load_cached_ = true
    );
 
    ~FIAMSScheduler() = default;
 
    FIAMSScheduler(const FIAMSScheduler& cp) = default;
 
    FIAMSScheduler& operator=(const FIAMSScheduler& fdp) = default;
 
    void run();
 
    const std::vector<std::map<std::string, std::string>>& getSamples();
 
    const std::string& getBaseDir();
 
    const std::string& getOutputDir();
 
private:
    void loadSamples_();
 
    std::string filename_;                                       
    std::string base_dir_;                                       
    std::string output_dir_;                                     
    bool load_cached_;                                      
    std::vector<std::map<std::string, std::string>> samples_;         
  };
} // namespace OpenMS