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LPWrapper.h
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1// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
2// SPDX-License-Identifier: BSD-3-Clause
3//
4// --------------------------------------------------------------------------
5// $Maintainer: Timo Sachsenberg $
6// $Authors: Alexandra Zerck $
7// --------------------------------------------------------------------------
8
9#pragma once
10
11#include <OpenMS/DATASTRUCTURES/StringUtils.h> // for String
12
14#include <OpenMS/OpenMSConfig.h>
15#include <OpenMS/config.h>
16
17#include <limits>
18#include <memory>
19
20// do NOT include glpk and CoinOr headers here, as they define bad stuff, which ripples through OpenMS then...
21// include them in LPWrapper.cpp where they do not harm
22// only declare them here
23class CoinModel;
24
25// Forward declare HiGHS
26class Highs;
27
28// if GLPK was found:
29#if !defined(OPENMS_HAS_COINOR) && !defined(OPENMS_HAS_HIGHS)
30 #ifndef GLP_PROB_DEFINED
31 #define GLP_PROB_DEFINED
32 // depending on the glpk version
33 // define glp_prob as forward or struct
34 #if OPENMS_GLPK_VERSION_MAJOR == 4 && OPENMS_GLPK_VERSION_MINOR < 48
35 typedef struct
36 {
37 double _opaque_prob[100];
38 } glp_prob;
39 #else
40 class glp_prob;
41 #endif
42 #endif
43#endif
44
45namespace OpenMS
46{
47
70 class OPENMS_DLLAPI LPWrapper
71 {
72public:
83 {
88 message_level(3), branching_tech(4), backtrack_tech(3),
89 preprocessing_tech(2), enable_feas_pump_heuristic(true), enable_gmi_cuts(true),
90 enable_mir_cuts(true), enable_cov_cuts(true), enable_clq_cuts(true), mip_gap(0.0),
91 time_limit((std::numeric_limits<Int>::max)()), output_freq(5000), output_delay(10000), enable_presolve(true),
92 enable_binarization(true)
93 {
94 }
95
105 double mip_gap;
111 };
112
126
133 {
134 CONTINUOUS = 1,
136 BINARY
137 };
138
144 enum Sense
145 {
146 MIN = 1,
147 MAX
148 };
149
156 {
157 FORMAT_LP = 0,
159 FORMAT_GLPK
160 };
161
168 {
169 SOLVER_GLPK = 0
170#ifdef OPENMS_HAS_COINOR
171 , SOLVER_COINOR
172#endif
173#ifdef OPENMS_HAS_HIGHS
174 , SOLVER_HIGHS
175#endif
176 };
177
184 {
185 UNDEFINED = 1,
186 OPTIMAL = 5,
187 FEASIBLE = 2,
188 NO_FEASIBLE_SOL = 4
189 };
190
198
204 virtual ~LPWrapper();
205
206 // problem creation/manipulation
215 Int addRow(const std::vector<Int>& row_indices, const std::vector<double>& row_values, const std::string& name);
216
223
232 Int addColumn(const std::vector<Int>& column_indices, const std::vector<double>& column_values, const std::string& name);
233
246 Int addRow(const std::vector<Int>& row_indices, const std::vector<double>& row_values,
247 const std::string& name, double lower_bound, double upper_bound, Type type);
248
259 Int addColumn(const std::vector<Int>& column_indices, const std::vector<double>& column_values, const std::string& name, double lower_bound, double upper_bound, Type type);
260
266 void deleteRow(Int index);
267
274 void setColumnName(Int index, const std::string& name);
275
282 std::string getColumnName(Int index);
283
290 std::string getRowName(Int index);
291
298 Int getRowIndex(const std::string& name);
299
306 Int getColumnIndex(const std::string& name);
307
315
323
330 double getRowUpperBound(Int index);
331
338 double getRowLowerBound(Int index);
339
346 void setRowName(Int index, const std::string& name);
347
356 void setColumnBounds(Int index, double lower_bound, double upper_bound, Type type);
357
366 void setRowBounds(Int index, double lower_bound, double upper_bound, Type type);
367
374 void setColumnType(Int index, VariableType type);
375
383
390 void setObjective(Int index, double obj_value);
391
398 double getObjective(Int index);
399
412
419
426
434 void setElement(Int row_index, Int column_index, double value);
435
443 double getElement(Int row_index, Int column_index);
444
445 // problem reading/writing
452 void readProblem(const std::string& filename, const std::string& format);
453
460 void writeProblem(const std::string& filename, const WriteFormat format) const;
461
472 Int solve(SolverParam& solver_param, const Size verbose_level = 0);
473
480
481 // solution access
488
495 double getColumnValue(Int index);
496
504
511 void getMatrixRow(Int idx, std::vector<Int>& indexes);
512
519
520protected:
521#ifdef OPENMS_HAS_COINOR
522 CoinModel * model_ = nullptr;
523 std::vector<double> solution_;
524#elif defined(OPENMS_HAS_HIGHS)
525 std::unique_ptr<Highs> highs_;
526 std::vector<double> solution_;
527#else
528 glp_prob * lp_problem_ = nullptr;
529#endif
530
532
533
534 }; // class
535
536} // namespace
537
A wrapper class for linear programming (LP) solvers.
Definition LPWrapper.h:71
Int addColumn()
Adds an empty column to the LP matrix.
Int addRow(const std::vector< Int > &row_indices, const std::vector< double > &row_values, const std::string &name, double lower_bound, double upper_bound, Type type)
Adds a row with boundaries to the LP matrix, returns index.
Int addColumn(const std::vector< Int > &column_indices, const std::vector< double > &column_values, const std::string &name, double lower_bound, double upper_bound, Type type)
Adds a column with boundaries to the LP matrix, returns index.
void setObjective(Int index, double obj_value)
Set the objective coefficient for a column/variable.
void setColumnBounds(Int index, double lower_bound, double upper_bound, Type type)
Set column bounds.
std::string getColumnName(Int index)
Get the name of a column.
Int solve(SolverParam &solver_param, const Size verbose_level=0)
solve problems, parameters like enabled heuristics can be given via solver_param
Type
Enumeration for variable/constraint bound types.
Definition LPWrapper.h:119
@ UPPER_BOUND_ONLY
Only upper bound is specified.
Definition LPWrapper.h:122
@ LOWER_BOUND_ONLY
Only lower bound is specified.
Definition LPWrapper.h:121
@ DOUBLE_BOUNDED
Both lower and upper bounds are specified.
Definition LPWrapper.h:123
double getObjective(Int index)
Get the objective coefficient for a column/variable.
double getElement(Int row_index, Int column_index)
Get the value of a matrix element at the specified position.
void writeProblem(const std::string &filename, const WriteFormat format) const
Write LP formulation to a file.
void setObjectiveSense(Sense sense)
Set objective direction.
double getObjectiveValue()
Get the objective function value of the solution.
Int getColumnIndex(const std::string &name)
Find the index of a column by its name.
Sense getObjectiveSense()
Get the current objective direction.
Int getNumberOfNonZeroEntriesInRow(Int idx)
Get the number of non-zero entries in a specific row.
void setElement(Int row_index, Int column_index, double value)
Set the value of a matrix element at the specified position.
void deleteRow(Int index)
Delete the row at the specified index.
std::string getRowName(Int index)
Get the name of a row.
void setRowName(Int index, const std::string &name)
Set the name of a row.
VariableType getColumnType(Int index)
Get column/variable type.
SOLVER getSolver() const
Get the currently active solver backend.
SolverStatus
Enumeration for solver status after solving an LP problem.
Definition LPWrapper.h:184
Int addRow(const std::vector< Int > &row_indices, const std::vector< double > &row_values, const std::string &name)
Adds a row to the LP matrix.
void setRowBounds(Int index, double lower_bound, double upper_bound, Type type)
Set row bounds.
Int getNumberOfColumns()
Get the number of columns/variables in the LP problem.
double getRowUpperBound(Int index)
Get the upper bound of a row.
LPWrapper()
Default constructor.
void setColumnType(Int index, VariableType type)
Set column/variable type.
void setColumnName(Int index, const std::string &name)
Set the name of a column.
SolverStatus getStatus()
Get solution status.
SOLVER
Enumeration for available LP solvers.
Definition LPWrapper.h:168
SOLVER solver_
Currently active solver backend.
Definition LPWrapper.h:531
void getMatrixRow(Int idx, std::vector< Int > &indexes)
Get the indices of non-zero entries in a specific row.
double getRowLowerBound(Int index)
Get the lower bound of a row.
Int getNumberOfRows()
Get the number of rows/constraints in the LP problem.
Int getRowIndex(const std::string &name)
Find the index of a row by its name.
Sense
Enumeration for optimization direction.
Definition LPWrapper.h:145
VariableType
Enumeration for variable types in the LP problem.
Definition LPWrapper.h:133
@ INTEGER
Integer variable (can only take integer values within bounds)
Definition LPWrapper.h:135
double getColumnUpperBound(Int index)
Get the upper bound of a column.
void readProblem(const std::string &filename, const std::string &format)
Read LP from file.
double getColumnLowerBound(Int index)
Get the lower bound of a column.
Int addColumn(const std::vector< Int > &column_indices, const std::vector< double > &column_values, const std::string &name)
Adds a column to the LP matrix.
double getColumnValue(Int index)
Get the value of a variable in the solution.
virtual ~LPWrapper()
Virtual destructor.
WriteFormat
Enumeration for LP problem file formats.
Definition LPWrapper.h:156
@ FORMAT_MPS
MPS format (industry standard)
Definition LPWrapper.h:158
int Int
Signed integer type.
Definition Types.h:72
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition Types.h:97
Main OpenMS namespace.
Definition openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:19
STL namespace.
Struct that holds the parameters of the LP solver.
Definition LPWrapper.h:83
Int backtrack_tech
Backtracking technique for MIP problems.
Definition LPWrapper.h:98
double mip_gap
Relative gap tolerance for MIP problems.
Definition LPWrapper.h:105
Int branching_tech
Branching technique for MIP problems.
Definition LPWrapper.h:97
bool enable_binarization
Enable binarization (only with presolve)
Definition LPWrapper.h:110
bool enable_cov_cuts
Enable cover cuts.
Definition LPWrapper.h:103
Int time_limit
Time limit in milliseconds.
Definition LPWrapper.h:106
bool enable_gmi_cuts
Enable Gomory mixed-integer cuts.
Definition LPWrapper.h:101
Int message_level
Controls verbosity of solver output (0-3)
Definition LPWrapper.h:96
Int output_delay
Output delay in milliseconds.
Definition LPWrapper.h:108
bool enable_presolve
Enable presolve techniques.
Definition LPWrapper.h:109
bool enable_mir_cuts
Enable mixed-integer rounding cuts.
Definition LPWrapper.h:102
SolverParam()
Default constructor that initializes all parameters with reasonable defaults.
Definition LPWrapper.h:87
Int output_freq
Output frequency in milliseconds.
Definition LPWrapper.h:107
bool enable_feas_pump_heuristic
Enable feasibility pump heuristic.
Definition LPWrapper.h:100
Int preprocessing_tech
Preprocessing technique.
Definition LPWrapper.h:99
bool enable_clq_cuts
Enable clique cuts.
Definition LPWrapper.h:104