MRMFeaturePickerFile.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Douglas McCloskey, Pasquale Domenico Colaianni $
// $Authors: Douglas McCloskey, Pasquale Domenico Colaianni $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h> // OPENMS_DLLAPI
#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeaturePicker.h>
#include <OpenMS/FORMAT/CsvFile.h>
#include <map>
 
namespace OpenMS
{
  class OPENMS_DLLAPI MRMFeaturePickerFile :
    public CsvFile
  {
public:
    MRMFeaturePickerFile() = default;
    ~MRMFeaturePickerFile() override = default;
 
    void load(
      const std::string& filename,
      std::vector<MRMFeaturePicker::ComponentParams>& cp_list,
      std::vector<MRMFeaturePicker::ComponentGroupParams>& cgp_list
    );
 
protected:
    bool extractParamsFromLine_(
      const StringList& line,
      const std::map<std::string, Size>& headers,
      MRMFeaturePicker::ComponentParams& cp,
      MRMFeaturePicker::ComponentGroupParams& cgp
    ) const;
 
    void setCastValue_(const std::string& key, const std::string& value, Param& params) const;
  };
}