RWrapper.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
 
#include <vector>
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI RWrapper
  {
public:
 
 
    static std::string findScript(const std::string& script_file, bool verbose = true);
 
    static bool findR(const std::string& executable = "Rscript", bool verbose = true);
 
 
    static bool runScript(const std::string& script_file, const std::vector<std::string>& cmd_args, const std::string& executable = "Rscript", bool find_R = false, bool verbose = true);
 
  };
 
}