Sample.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/METADATA/MetaInfoInterface.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI Sample :
    public MetaInfoInterface
  {
public:
    enum class SampleState {SAMPLENULL, SOLID, LIQUID, GAS, SOLUTION, EMULSION, SUSPENSION, SIZE_OF_SAMPLESTATE};
    static const std::string NamesOfSampleState[static_cast<size_t>(SampleState::SIZE_OF_SAMPLESTATE)];
 
    static StringList getAllNamesOfSampleState();
 
    static const std::string& sampleStateToString(SampleState state);
 
    static SampleState toSampleState(const std::string& name);
 
    Sample();
    Sample(const Sample & source);
    Sample(Sample&&) = default;
    ~Sample();
 
    Sample & operator=(const Sample & source);
    Sample& operator=(Sample&&) & = default;
 
    bool operator==(const Sample & rhs) const;
 
    const std::string & getName() const;
    void setName(const std::string & name);
 
    const std::string & getOrganism() const;
    void setOrganism(const std::string & organism);
 
    const std::string & getNumber() const;
    void setNumber(const std::string & number);
 
    const std::string & getComment() const;
    void setComment(const std::string & comment);
 
    SampleState getState() const;
    void setState(SampleState state);
 
    double getMass() const;
    void setMass(double mass);
 
    double getVolume() const;
    void setVolume(double volume);
 
    double getConcentration() const;
    void setConcentration(double concentration);
 
    std::vector<Sample> & getSubsamples();
    const std::vector<Sample> & getSubsamples() const;
    void setSubsamples(const std::vector<Sample> & subsamples);
 
protected:
    std::string name_;
    std::string number_;
    std::string comment_;
    std::string organism_;
    SampleState state_;
    double mass_;
    double volume_;
    double concentration_;
    std::vector<Sample> subsamples_;
  };
} // namespace OpenMS