This is the complete list of members for CrossLinksDB, including all inherited members.

addModification(std::unique_ptr< ResidueModification > new_mod) const	ModificationsDB
addModification(const ResidueModification &new_mod) const	ModificationsDB
addNewModification_(const ResidueModification &new_mod) const	ModificationsDB	private
CrossLinksDB()	CrossLinksDB	private
CrossLinksDB(const CrossLinksDB &residue_db)	CrossLinksDB	private
findModificationIndex(const std::string &mod_name) const	ModificationsDB
getAllSearchModifications(std::vector< std::string > &modifications) const	CrossLinksDB
getBestModificationByDiffMonoMass(double mass, double max_error, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
getInstance()	CrossLinksDB	inlinestatic
getModification(Size index) const	ModificationsDB
getModification(const std::string &mod_name, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
getNumberOfModifications() const	ModificationsDB
has(const std::string &modification) const	ModificationsDB
initializeModificationsDB(std::string unimod_file="CHEMISTRY/unimod.xml", std::string custommod_file="CHEMISTRY/custom_mods.xml", std::string psimod_file="CHEMISTRY/PSI-MOD.obo", std::string xlmod_file="CHEMISTRY/XLMOD.obo")	ModificationsDB	static
is_instantiated_	ModificationsDB	protectedstatic
isInstantiated()	ModificationsDB	static
loadFromProviders_(std::vector< std::unique_ptr< ModificationDataProvider > > &providers)	ModificationsDB	private
makeCrossLinkProviders_()	CrossLinksDB	privatestatic
modification_names_	ModificationsDB	mutableprotected
ModificationsDB(std::vector< std::unique_ptr< ModificationDataProvider > > providers)	ModificationsDB	explicit
ModificationsDB(const ModificationsDB &residue_db)	ModificationsDB	private
mods_	ModificationsDB	mutableprotected
operator=(const CrossLinksDB &aa)	CrossLinksDB	private
residuesMatch_(const char residue, const ResidueModification *curr_mod) const	ModificationsDB	protected
searchModification(const ResidueModification &mod_in) const	ModificationsDB
searchModifications(std::set< const ResidueModification * > &mods, const std::string &mod_name, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
searchModificationsByDiffMonoMass(std::vector< std::string > &mods, double mass, double max_error, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
searchModificationsByDiffMonoMass(std::vector< const ResidueModification * > &mods, double mass, double max_error, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
searchModificationsByDiffMonoMassSorted(std::vector< std::string > &mods, double mass, double max_error, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
searchModificationsByDiffMonoMassSorted(std::vector< const ResidueModification * > &mods, double mass, double max_error, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
searchModificationsFast(const std::string &mod_name, bool &multiple_matches, const std::string &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const	ModificationsDB
writeTSV(const std::string &filename) const	ModificationsDB
~CrossLinksDB() override	CrossLinksDB	private
~ModificationsDB()	ModificationsDB	virtual