OSWFile Member List

This is the complete list of members for OSWFile, including all inherited members.

ALL_PROTEINS	OSWFile	static
conn_	OSWFile	private
filename_	OSWFile	private
getFullProteins_(OSWData &swath_result, Size prot_index=ALL_PROTEINS)	OSWFile	protected
getRunID() const	OSWFile
has_SCOREMS2_	OSWFile	private
names_of_oswlevel	OSWFile	static
operator=(const OSWFile &rhs)=default	OSWFile
OSWFile(const std::string &filename)	OSWFile
OSWFile(const OSWFile &rhs)=default	OSWFile
OSWLevel enum name	OSWFile
read(OSWData &swath_result)	OSWFile
readIPFAlignmentData(const PeptidoformInferenceConfig &config) const	OSWFile
readIPFAlignmentData(double ipf_max_alignment_pep) const	OSWFile
readIPFPrecursorData(const PeptidoformInferenceConfig &config) const	OSWFile
readIPFTransitionData(const PeptidoformInferenceConfig &config) const	OSWFile
readLevelContextData(InferenceLevel level, InferenceContext context) const	OSWFile
readMeta_(OSWData &data)	OSWFile	protected
readMinimal(OSWData &swath_result)	OSWFile
readOpenSwathExportRows(const OpenSwathExportFilterConfig &config) const	OSWFile
readOpenSwathFeatureScoreTable(const OpenSwathParquetExportConfig &config) const	OSWFile
readOpenSwathTransitionScoreTable(const OpenSwathParquetExportConfig &config) const	OSWFile
readProtein(OSWData &swath_result, const Size index)	OSWFile
readRunBasenames() const	OSWFile
readToPIN(const std::string &filename, const OSWFile::OSWLevel osw_level, std::ostream &pin_output, const double ipf_max_peakgroup_pep, const double ipf_max_transition_isotope_overlap, const double ipf_min_transition_sn)	OSWFile	static
readTransitions_(OSWData &swath_result)	OSWFile	protected
writeFromPercolator(const std::string &osw_filename, const OSWFile::OSWLevel osw_level, const std::map< std::string, PercolatorFeature > &features)	OSWFile	static
writeIPFResults(const std::string &output_filename, const std::vector< IPFResultRow > &results) const	OSWFile
writeLevelContextResults(const std::string &output_filename, InferenceLevel level, InferenceContext context, const std::vector< LevelContextResultRow > &results) const	OSWFile