| aminoacid_ | PepXMLFile::AminoAcidModification | private |
| AminoAcidModification()=delete | PepXMLFile::AminoAcidModification | |
| AminoAcidModification(const std::string &aminoacid, const std::string &massdiff, const std::string &mass, std::string variable, const std::string &description, std::string terminus, const std::string &protein_terminus, const std::vector< const ResidueModification * > &preferred_fixed_mods, const std::vector< const ResidueModification * > &preferred_var_mods, double tolerance) | PepXMLFile::AminoAcidModification | |
| AminoAcidModification(const AminoAcidModification &rhs)=default | PepXMLFile::AminoAcidModification | |
| description_ | PepXMLFile::AminoAcidModification | private |
| errors_ | PepXMLFile::AminoAcidModification | private |
| getAminoAcid() const | PepXMLFile::AminoAcidModification | |
| getDescription() const | PepXMLFile::AminoAcidModification | |
| getErrors() const | PepXMLFile::AminoAcidModification | |
| getMass() const | PepXMLFile::AminoAcidModification | |
| getMassDiff() const | PepXMLFile::AminoAcidModification | |
| getRegisteredMod() const | PepXMLFile::AminoAcidModification | |
| getTerminus() const | PepXMLFile::AminoAcidModification | |
| is_protein_terminus_ | PepXMLFile::AminoAcidModification | private |
| is_variable_ | PepXMLFile::AminoAcidModification | private |
| isVariable() const | PepXMLFile::AminoAcidModification | |
| lookupModInPreferredMods_(const std::vector< const ResidueModification * > &preferred_fixed_mods, const std::string &aminoacid, double massdiff, const std::string &description, const ResidueModification::TermSpecificity term_spec, double tolerance) | PepXMLFile::AminoAcidModification | private |
| mass_ | PepXMLFile::AminoAcidModification | private |
| massdiff_ | PepXMLFile::AminoAcidModification | private |
| operator=(const AminoAcidModification &rhs)=default | PepXMLFile::AminoAcidModification | |
| registered_mod_ | PepXMLFile::AminoAcidModification | private |
| term_spec_ | PepXMLFile::AminoAcidModification | private |
| terminus_ | PepXMLFile::AminoAcidModification | private |
| toUnimodLikeString() const | PepXMLFile::AminoAcidModification | |
| ~AminoAcidModification()=default | PepXMLFile::AminoAcidModification | virtual |