OpenMS
DigestionEnzymeRNA.h
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1 // Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
2 // SPDX-License-Identifier: BSD-3-Clause
3 //
4 // --------------------------------------------------------------------------
5 // $Maintainer: Hendrik Weisser $
6 // $Authors: Hendrik Weisser $
7 // --------------------------------------------------------------------------
8 //
9 
10 #pragma once
11 
13 
14 namespace OpenMS
15 {
31  class OPENMS_DLLAPI DigestionEnzymeRNA: public DigestionEnzyme
32  {
33  public:
35  void setCutsAfterRegEx(const String& value);
36 
39 
41  void setCutsBeforeRegEx(const String& value);
42 
45 
47  void setThreePrimeGain(const String& value);
48 
51 
53  void setFivePrimeGain(const String& value);
54 
57 
63  bool setValueFromFile(const String& key, const String& value) override;
64 
65  protected:
70  };
71 
73 }
74 
Representation of a digestion enzyme for RNA (RNase)
Definition: DigestionEnzymeRNA.h:32
void setCutsBeforeRegEx(const String &value)
sets the "cuts before ..." regular expression
bool setValueFromFile(const String &key, const String &value) override
Set the value of a member variable based on an entry from an input file.
String three_prime_gain_
Definition: DigestionEnzymeRNA.h:66
String getFivePrimeGain() const
returns the 5' gain (as a nucleotide modification code)
void setCutsAfterRegEx(const String &value)
sets the "cuts after ..." regular expression
String cuts_after_regex_
Definition: DigestionEnzymeRNA.h:68
void setThreePrimeGain(const String &value)
sets the 3' gain (as a nucleotide modification code)
String getCutsAfterRegEx() const
returns the "cuts after ..." regular expression
String getThreePrimeGain() const
returns the 3' gain (as a nucleotide modification code)
String cuts_before_regex_
Definition: DigestionEnzymeRNA.h:69
String five_prime_gain_
Definition: DigestionEnzymeRNA.h:67
String getCutsBeforeRegEx() const
returns the "cuts before ..." regular expression
void setFivePrimeGain(const String &value)
sets the 5' gain (as a nucleotide modification code)
Base class for digestion enzymes.
Definition: DigestionEnzyme.h:27
A more convenient string class.
Definition: String.h:34
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:22
DigestionEnzymeRNA RNase
Definition: DigestionEnzymeRNA.h:72