OpenMS
IDMergerAlgorithm Member List

This is the complete list of members for IDMergerAlgorithm, including all inherited members.

accessionEqual_(const ProteinHit &p1, const ProteinHit &p2)IDMergerAlgorithminlineprivatestatic
accessionHash_(const ProteinHit &p)IDMergerAlgorithminlineprivatestatic
check_defaults_DefaultParamHandlerprotected
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const String &experiment_type) constIDMergerAlgorithmprivate
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const ProteinIdentification &ref, const String &experiment_type) constIDMergerAlgorithmprivate
CMD enum valueProgressLogger
collected_protein_hits_IDMergerAlgorithmprivate
copySearchParams_(const ProteinIdentification &from, ProteinIdentification &to)IDMergerAlgorithmprivatestatic
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress(UInt64 bytes_processed=0) constProgressLogger
equal_type typedefIDMergerAlgorithmprivate
error_name_DefaultParamHandlerprotected
file_origin_to_idx_IDMergerAlgorithmprivate
filled_IDMergerAlgorithmprivate
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getNewIdentifier_() constIDMergerAlgorithmprivate
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
hash_type typedefIDMergerAlgorithmprivate
id_IDMergerAlgorithmprivate
IDMergerAlgorithm(const String &runIdentifier="merged")IDMergerAlgorithmexplicit
insertProteinIDs_(std::vector< ProteinIdentification > &&old_protRuns)IDMergerAlgorithmprivate
insertRuns(std::vector< ProteinIdentification > &&prots, std::vector< PeptideIdentification > &&peps)IDMergerAlgorithm
insertRuns(const std::vector< ProteinIdentification > &prots, const std::vector< PeptideIdentification > &peps)IDMergerAlgorithm
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
movePepIDsAndRefProteinsToResultFaster_(std::vector< PeptideIdentification > &&pepIDs, std::vector< ProteinIdentification > &&old_protRuns)IDMergerAlgorithmprivate
nextProgress() constProgressLogger
NONE enum valueProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
pep_result_IDMergerAlgorithmprivate
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
prot_result_IDMergerAlgorithmprivate
recursion_depth_ProgressLoggerprotectedstatic
returnResultsAndClear(ProteinIdentification &prots, std::vector< PeptideIdentification > &peps)IDMergerAlgorithm
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateAndMovePepIDs_(std::vector< PeptideIdentification > &&pepIDs, const std::map< String, Size > &runID_to_runIdx, const std::vector< StringList > &originFiles, bool annotate_origin)IDMergerAlgorithmprivate
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~ProgressLogger()ProgressLoggervirtual