OpenMS
PeptideAndProteinQuant Member List

This is the complete list of members for PeptideAndProteinQuant, including all inherited members.

annotateQuantificationsToProteins(const ProteinQuant &protein_quants, ProteinIdentification &proteins, bool remove_unquantified=true)PeptideAndProteinQuant
check_defaults_DefaultParamHandlerprotected
countPeptides_(std::vector< PeptideIdentification > &peptides)PeptideAndProteinQuantprivate
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getAccession_(const std::set< String > &pep_accessions, std::map< String, String > &accession_to_leader)PeptideAndProteinQuantprivate
getAnnotation_(std::vector< PeptideIdentification > &peptides)PeptideAndProteinQuantprivate
getBest_(const std::map< Int, std::map< Int, SampleAbundances >> &peptide_abundances, std::pair< size_t, size_t > &best)PeptideAndProteinQuantprivate
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getPeptideResults()PeptideAndProteinQuant
getProteinResults()PeptideAndProteinQuant
getStatistics()PeptideAndProteinQuant
getSubsections() constDefaultParamHandler
normalizePeptides_()PeptideAndProteinQuantprivate
operator=(const DefaultParamHandler &rhs)DefaultParamHandler
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
orderBest_(const std::map< T, SampleAbundances > &abundances, std::vector< T > &result)PeptideAndProteinQuantinlineprivate
param_DefaultParamHandlerprotected
pep_quant_PeptideAndProteinQuantprivate
PeptideAndProteinQuant()PeptideAndProteinQuant
PeptideQuant typedefPeptideAndProteinQuant
prot_quant_PeptideAndProteinQuantprivate
ProteinQuant typedefPeptideAndProteinQuant
quantifyFeature_(const FeatureHandle &feature, size_t fraction, size_t sample, const PeptideHit &hit)PeptideAndProteinQuantprivate
quantifyPeptides(const std::vector< PeptideIdentification > &peptides=std::vector< PeptideIdentification >())PeptideAndProteinQuant
quantifyProteins(const ProteinIdentification &proteins=ProteinIdentification())PeptideAndProteinQuant
readQuantData(FeatureMap &features, const ExperimentalDesign &ed)PeptideAndProteinQuant
readQuantData(ConsensusMap &consensus, const ExperimentalDesign &ed)PeptideAndProteinQuant
readQuantData(std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const ExperimentalDesign &ed)PeptideAndProteinQuant
SampleAbundances typedefPeptideAndProteinQuant
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
stats_PeptideAndProteinQuantprivate
subsections_DefaultParamHandlerprotected
updateMembers_() overridePeptideAndProteinQuantprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~PeptideAndProteinQuant() overridePeptideAndProteinQuantinline