OpenMS
QTClusterFinder Member List

This is the complete list of members for QTClusterFinder, including all inherited members.

addClusterElements_(const Grid &grid, QTCluster &cluster)QTClusterFinderprivate
already_used_QTClusterFinderprivate
BaseGroupFinder()BaseGroupFinder
BaseGroupFinder(const BaseGroupFinder &)BaseGroupFinderprivate
bin_tolerances_QTClusterFinderprivate
check_defaults_DefaultParamHandlerprotected
checkIds_(const std::vector< ConsensusMap > &maps) constBaseGroupFinderprotected
CMD enum valueProgressLogger
computeClustering_(const Grid &grid, Heap &cluster_heads, std::vector< QTCluster::BulkData > &cluster_data, std::vector< Heap::handle_type > &handles, ElementMapping &element_mapping)QTClusterFinderprivate
create()QTClusterFinderinlinestatic
createConsensusFeature_(ConsensusFeature &feature, const double quality, const QTCluster::Elements &elements)QTClusterFinderprivate
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
distIsOutlier_(double dist, double rt)QTClusterFinderprivate
ElementMapping typedefQTClusterFinder
endProgress(UInt64 bytes_processed=0) constProgressLogger
error_name_DefaultParamHandlerprotected
feature_distance_QTClusterFinderprivate
getDefaults() constDefaultParamHandler
getDistance_(const OpenMS::GridFeature *left, const OpenMS::GridFeature *right)QTClusterFinderprivate
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getProductName()QTClusterFinderinlinestatic
getSubsections() constDefaultParamHandler
Grid typedefQTClusterFinder
GUI enum valueProgressLogger
Heap typedefQTClusterFinder
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
makeConsensusFeature_(Heap &cluster_heads, ConsensusFeature &feature, ElementMapping &element_mapping, const Grid &grid, const std::vector< Heap::handle_type > &handles)QTClusterFinderprivate
max_diff_mz_QTClusterFinderprivate
max_diff_rt_QTClusterFinderprivate
min_nr_diffs_per_bin_QTClusterFinderprivate
min_score_QTClusterFinderprivate
MZ enum valueQTClusterFinderprotected
nextProgress() constProgressLogger
noID_penalty_QTClusterFinderprivate
NONE enum valueProgressLogger
nr_partitions_QTClusterFinderprivate
num_maps_QTClusterFinderprivate
operator=(const BaseGroupFinder &)BaseGroupFinderprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
PairDistances typedefQTClusterFinder
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
QTClusterFinder()QTClusterFinder
recursion_depth_ProgressLoggerprotectedstatic
registerChildren()BaseGroupFinderstatic
removeFromElementMapping_(const QTCluster &cluster, ElementMapping &element_mapping)QTClusterFinderprivate
RT enum valueQTClusterFinderprotected
run(const std::vector< ConsensusMap > &input_maps, ConsensusMap &result_map) overrideQTClusterFindervirtual
run(const std::vector< FeatureMap > &input_maps, ConsensusMap &result_map)QTClusterFinder
run_(const std::vector< MapType > &input_maps, ConsensusMap &result_map)QTClusterFinderprivate
run_internal_(const std::vector< MapType > &input_maps, ConsensusMap &result_map, bool do_progress)QTClusterFinderprivate
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setParameters_(double max_intensity, double max_mz)QTClusterFinderprivate
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateClustering_(ElementMapping &element_mapping, const Grid &grid, const QTCluster::Elements &elements, Heap &cluster_heads, const std::vector< Heap::handle_type > &handles, Size best_id)QTClusterFinderprivate
updateMembers_()DefaultParamHandlerprotectedvirtual
use_IDs_QTClusterFinderprivate
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~BaseGroupFinder() overrideBaseGroupFinder
~DefaultParamHandler()DefaultParamHandlervirtual
~ProgressLogger()ProgressLoggervirtual
~QTClusterFinder() overrideQTClusterFinder