OpenMS
QcMLFile Member List

This is the complete list of members for QcMLFile, including all inherited members.

ActionMode enum nameXMLHandler
addRunAttachment(const String &r, const Attachment &at)QcMLFile
addRunQualityParameter(const String &r, const QualityParameter &qp)QcMLFile
addSetAttachment(const String &r, const Attachment &at)QcMLFile
addSetQualityParameter(const String &r, const QualityParameter &qp)QcMLFile
asBool_(const String &in) constXMLHandlerinlineprotected
asDateTime_(String date_string) constXMLHandlerinlineprotected
asDouble_(const String &in) constXMLHandlerinlineprotected
asFloat_(const String &in) constXMLHandlerinlineprotected
asInt_(const String &in) constXMLHandlerinlineprotected
asInt_(const XMLCh *in) constXMLHandlerinlineprotected
asUInt_(const String &in) constXMLHandlerinlineprotected
at_QcMLFileprotected
ats_QcMLFileprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) overrideQcMLFileprotected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) constXMLHandler
CMD enum valueProgressLogger
collectQCData(std::vector< ProteinIdentification > &prot_ids, std::vector< PeptideIdentification > &pep_ids, const FeatureMap &feature_map, const ConsensusMap &consensus_map, const String &inputfile_raw, const bool remove_duplicate_features, const MSExperiment &exp)QcMLFile
collectSetParameter(const String &setname, const String &qp, std::vector< String > &ret)QcMLFile
current_logger_ProgressLoggermutableprotected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideQcMLFileprotected
endProgress(UInt64 bytes_processed=0) constProgressLogger
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
existsRun(const String &filename, bool checkname=false) constQcMLFile
existsRunQualityParameter(const String &filename, const String &qpname, std::vector< String > &ids) constQcMLFile
existsSet(const String &filename, bool checkname=false) constQcMLFile
existsSetQualityParameter(const String &filename, const String &qpname, std::vector< String > &ids) constQcMLFile
expectList_(const String &str) constXMLHandlerinlineprivate
exportAttachment(const String &filename, const String &qpname) constQcMLFile
exportIDstats(const String &filename) constQcMLFile
exportQP(const String &filename, const String &qpname) constQcMLFile
exportQPs(const String &filename, const StringList &qpnames) constQcMLFile
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
file_XMLHandlerprotected
fromXSDString(const String &type, const String &value)XMLHandlerinlinestatic
getLoadDetail() constXMLHandlervirtual
getLogType() constProgressLogger
getRunIDs(std::vector< String > &ids) constQcMLFile
getRunNames(std::vector< String > &ids) constQcMLFile
getVersion() constXMLFile
GUI enum valueProgressLogger
header_QcMLFileprotected
isValid(const String &filename, std::ostream &os)XMLFile
last_invoke_ProgressLoggermutableprotected
LD_ALLDATA enum valueXMLHandler
LD_COUNTS_WITHOPTIONS enum valueXMLHandler
LD_RAWCOUNTS enum valueXMLHandler
load(const String &filename)QcMLFile
LOAD enum valueXMLHandler
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandler
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
map2csv(const std::map< String, std::map< String, String > > &cvs_table, const String &separator) constQcMLFile
merge(const QcMLFile &addendum, const String &setname="")QcMLFile
name_QcMLFileprotected
names_QcMLFileprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
open_tags_XMLHandlerprotected
operator=(const ProgressLogger &other)ProgressLogger
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
parseBuffer_(const std::string &buffer, XMLHandler *handler)XMLFileprotected
progress_QcMLFileprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
QcMLFile()QcMLFile
qp_QcMLFileprotected
qps_QcMLFileprotected
recursion_depth_ProgressLoggerprotectedstatic
registerRun(const String &id, const String &name)QcMLFile
registerSet(const String &id, const String &name, const std::set< String > &names)QcMLFile
removeAllAttachments(const String &at)QcMLFile
removeAttachment(const String &r, std::vector< String > &ids, const String &at="")QcMLFile
removeAttachment(const String &r, const String &at)QcMLFile
removeQualityParameter(const String &r, std::vector< String > &ids)QcMLFile
reset()XMLHandler
row_QcMLFileprotected
run_id_QcMLFileprotected
run_Name_ID_map_QcMLFileprotected
runQualityAts_QcMLFileprotected
runQualityQPs_QcMLFileprotected
save_(const String &filename, XMLHandler *handler) constXMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
set_Name_ID_map_QcMLFileprotected
setLoadDetail(const LOADDETAIL d)XMLHandlervirtual
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
setQualityAts_QcMLFileprotected
setQualityQPs_QcMLFileprotected
setQualityQPs_members_QcMLFileprotected
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideQcMLFileprotected
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
STORE enum valueXMLHandler
store(const String &filename) constQcMLFile
tag_QcMLFileprotected
type_ProgressLoggermutableprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
writeTo(std::ostream &)XMLHandlervirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XMLHandler(const String &filename, const String &version)XMLHandler
XMLHandler()XMLHandlerprivate
~ProgressLogger()ProgressLoggervirtual
~QcMLFile() overrideQcMLFile
~XMLFile()XMLFilevirtual
~XMLHandler() overrideXMLHandler