Filters a transition list by quick precursor evidence in raw data.

This tool scans one or more mzML/sqMass input runs with the OpenMS::TransitionListEvidenceFilter module and writes a filtered transition list for follow-up inspection or downstream DIA processing.

For multiple input files, the default behavior is a union across runs: a target precursor is kept if it has evidence in any mzML file. Use aggregation_method all to keep only targets observed in every input run. If split_file_input is set, all input files are interpreted as split SWATH windows from one run, matching OpenSwathWorkflow's split-input mode.

The evidence filter itself is target-only. If the output is meant for full target-decoy scoring, use decoy_handling keep_all or decoy_handling keep_matching; otherwise decoy transitions are removed from the filtered output.

Experimental classes:: This tool is experimental and intended for evaluating prefiltering strategies before integrating filtered libraries into production workflows.