#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h>
#include <OpenMS/FORMAT/TextFile.h>
#include <OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h>
#include <OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h>
#include <OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h>
#include <OpenMS/MATH/MISC/MathFunctions.h>