AverageLinkage.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Mathias Walzer $
// $Authors: $
// --------------------------------------------------------------------------
//
#pragma once

#include <vector>
#include <set>

#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DistanceMatrix.h>
#include <OpenMS/COMPARISON/CLUSTERING/ClusterFunctor.h>

namespace OpenMS
{
  class OPENMS_DLLAPI AverageLinkage :
    public ClusterFunctor, public ProgressLogger
  {
public:

    AverageLinkage();

    AverageLinkage(const AverageLinkage & source);

    ~AverageLinkage() override;

    AverageLinkage & operator=(const AverageLinkage & source);


    void operator()(DistanceMatrix<float> & original_distance, std::vector<BinaryTreeNode> & cluster_tree, const float threshold = 1) const override;

    static ClusterFunctor * create();

    static const String getProductName();

  };

}