OpenMS  2.4.0
BaseSuperimposer.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2018.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Clemens Groepl, Marc Sturm $
33 // --------------------------------------------------------------------------
34 
35 
36 #pragma once
37 
41 
43 
44 #include <utility>
45 #include <fstream>
46 
47 namespace OpenMS
48 {
56  class OPENMS_DLLAPI BaseSuperimposer :
57  public DefaultParamHandler,
58  public ProgressLogger
59  {
60 
61 public:
62 
65 
67  ~BaseSuperimposer() override;
68 
75  virtual void run(const ConsensusMap& map_model, const ConsensusMap& map_scene, TransformationDescription& transformation) = 0;
76 
78  static void registerChildren();
79 
80 private:
81 
84 
86  BaseSuperimposer& operator=(const BaseSuperimposer&);
87 
88  };
89 
90 } // namespace OpenMS
91 
A container for consensus elements.
Definition: ConsensusMap.h:75
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
The base class of all superimposer algorithms.
Definition: BaseSuperimposer.h:56
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:54
Generic description of a coordinate transformation.
Definition: TransformationDescription.h:60
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:91