ChargePair.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Chris Bielow $
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#pragma once

#include <OpenMS/DATASTRUCTURES/Compomer.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/OpenMSConfig.h>

#include <iosfwd>
#include <vector>

namespace OpenMS
{

  class OPENMS_DLLAPI ChargePair
  {

public:

    ChargePair();

    ChargePair(const Size& index0,
               const Size& index1,
               const Int& charge0,
               const Int& charge1,
               const Compomer& compomer,
               const double& mass_diff,
               const bool active);

    ChargePair(const ChargePair& rhs);

    ChargePair& operator=(const ChargePair& rhs);

    virtual ~ChargePair();


    //@name Accessors
    Int getCharge(UInt pairID) const;

    void setCharge(UInt pairID, Int e);

    Size getElementIndex(UInt pairID) const;

    void setElementIndex(UInt pairID, Size e);

    const Compomer& getCompomer() const;

    void setCompomer(const Compomer& compomer);

    double getMassDiff() const;

    void setMassDiff(double mass_diff);

    double getEdgeScore() const;

    void setEdgeScore(double score);

    bool isActive() const;

    void setActive(const bool active);


    virtual bool operator==(const ChargePair& i) const;

    virtual bool operator!=(const ChargePair& i) const;

protected:

    Size feature0_index_;
    Size feature1_index_;
    Int feature0_charge_;
    Int feature1_charge_;
    Compomer compomer_;
    double mass_diff_;
    double score_;
    bool is_active_;
  };

  OPENMS_DLLAPI std::ostream& operator<<(std::ostream& os, const ChargePair& cons);

} // namespace OpenMS