ConsensusMapNormalizerAlgorithmQuantile.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
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#pragma once

#include <OpenMS/KERNEL/ConsensusMap.h>

namespace OpenMS
{

  class OPENMS_DLLAPI ConsensusMapNormalizerAlgorithmQuantile
  {
private:
    ConsensusMapNormalizerAlgorithmQuantile(const ConsensusMapNormalizerAlgorithmQuantile & copyin);

    ConsensusMapNormalizerAlgorithmQuantile & operator=(const ConsensusMapNormalizerAlgorithmQuantile & rhs);

public:
    ConsensusMapNormalizerAlgorithmQuantile();

    virtual ~ConsensusMapNormalizerAlgorithmQuantile();

    static void normalizeMaps(ConsensusMap & map);

    static void resample(const std::vector<double> & data_in, std::vector<double> & data_out, UInt n_resampling_points);

    static void extractIntensityVectors(const ConsensusMap & map, std::vector<std::vector<double> > & out_intensities);

    static void setNormalizedIntensityValues(const std::vector<std::vector<double> > & feature_ints, ConsensusMap & map);
  };

} // namespace OpenMS