ConsensusMapNormalizerAlgorithmThreshold.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Lars Nilse $
// $Authors: Hendrik Brauer, Oliver Kohlbacher, Johannes Junker $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/KERNEL/ConsensusMap.h>

namespace OpenMS
{

  class OPENMS_DLLAPI ConsensusMapNormalizerAlgorithmThreshold
  {
private:
    ConsensusMapNormalizerAlgorithmThreshold(const ConsensusMapNormalizerAlgorithmThreshold & copyin);

    ConsensusMapNormalizerAlgorithmThreshold & operator=(const ConsensusMapNormalizerAlgorithmThreshold & rhs);

public:
    ConsensusMapNormalizerAlgorithmThreshold();

    virtual ~ConsensusMapNormalizerAlgorithmThreshold();

    static std::vector<double> computeCorrelation(const ConsensusMap & map, const double & ratio_threshold, const String & acc_filter, const String & desc_filter);

    static void normalizeMaps(ConsensusMap & map, const std::vector<double> & ratios);
  };

} // namespace OpenMS