DetectabilitySimulation.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Timo Sachsenberg$
// $Authors: Stephan Aiche, Chris Bielow$
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/SIMULATION/SimTypes.h>

namespace OpenMS
{
  class OPENMS_DLLAPI DetectabilitySimulation :
    public DefaultParamHandler
  {

public:
    DetectabilitySimulation();

    DetectabilitySimulation(const DetectabilitySimulation& source);

    ~DetectabilitySimulation() override;

    DetectabilitySimulation& operator=(const DetectabilitySimulation& source);

    void filterDetectability(SimTypes::FeatureMapSim& features);


    void predictDetectabilities(std::vector<String>& peptides_vector, std::vector<double>& labels,
                                std::vector<double>& detectabilities);
private:
    void setDefaultParams_();

    void updateMembers_() override;

    double min_detect_;

    OpenMS::String dt_model_file_;

protected:
    void svmFilter_(SimTypes::FeatureMapSim&);

    void noFilter_(SimTypes::FeatureMapSim&);

  };

}