EDTAFile.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
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#pragma once

#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/Feature.h>
#include <OpenMS/FORMAT/TextFile.h>

#include <fstream>
#include <vector>

namespace OpenMS
{
  class OPENMS_DLLAPI EDTAFile
  {
public:
    EDTAFile();
    virtual ~EDTAFile();

private:
    double checkedToDouble_(const std::vector<String> & parts, Size index, double def = -1);

    Int checkedToInt_(const std::vector<String> & parts, Size index, Int def = -1);

public:
    void load(const String & filename, ConsensusMap & consensus_map);

    void store(const String & filename, const ConsensusMap & map) const;


    void store(const String & filename, const FeatureMap & map) const;
  };
} // namespace OpenMS