ExperimentalDesignFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
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//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg, Lukas Zimmermann $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/DATASTRUCTURES/String.h>

#include <map>

namespace OpenMS
{
  class ExperimentalDesign;
 
  class OPENMS_DLLAPI ExperimentalDesignFile
  {
    public:


    static ExperimentalDesign load(const String &tsv_file, bool require_spectra_files);

    private:

    static void parseHeader_(
      const StringList &header,
      const String &filename,
      std::map <String, Size> &column_map,
      const std::set <String> &required,
      const std::set <String> &optional,
      bool allow_other_header);
  };
}