FeatureFinderAlgorithmMRM.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Andreas Bertsch $
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#pragma once

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h>

namespace OpenMS
{
  class InterpolationModel;

  class OPENMS_DLLAPI FeatureFinderAlgorithmMRM :
    public FeatureFinderAlgorithm,
    public FeatureFinderDefs
  {
public:

    typedef FeatureFinderAlgorithm::MapType MapType;
    typedef MapType::SpectrumType SpectrumType;
    typedef SpectrumType::FloatDataArrays FloatDataArrays;

    using FeatureFinderAlgorithm::param_;
    using FeatureFinderAlgorithm::features_;
    using FeatureFinderAlgorithm::ff_;
    using FeatureFinderAlgorithm::defaults_;
    using FeatureFinderAlgorithm::map_;

public:

    enum
    {
      RT = Peak2D::RT,
      MZ = Peak2D::MZ
    };

    FeatureFinderAlgorithmMRM();

    void run() override;

    static FeatureFinderAlgorithm* create();

    static const String getProductName();

protected:

    double fitRT_(std::vector<Peak1D>& rt_input_data, InterpolationModel*& model) const;

    //Docu in base class
    void updateMembers_() override;
  };

} // namespace OpenMS