FeatureFinderAlgorithmSHCtrl.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Timo Sachsenberg $
// $Authors: Florian Zeller $
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#pragma once

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/RawData.h>

#include <OpenMS/KERNEL/Feature.h>
#include <OpenMS/DATASTRUCTURES/Param.h>

#include <vector>
#include <map>

#include <boost/shared_ptr.hpp>

namespace OpenMS
{
  class SUPERHIRN_DLLAPI FeatureFinderAlgorithmSHCtrl
  {
public:
    typedef std::pair<double, boost::shared_ptr<RawData> > MyMap;
    typedef std::vector<MyMap> Vec;


    FeatureFinderAlgorithmSHCtrl() {}

    std::vector<Feature> extractPeaks(Vec datavec);

    void initParams(Param param);
  };
}