FeatureGroupingAlgorithm.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm, Clemens Groepl, Chris Bielow $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/KERNEL/ConsensusMap.h>

namespace OpenMS
{

  class OPENMS_DLLAPI FeatureGroupingAlgorithm :
    public DefaultParamHandler
  {
public:
    FeatureGroupingAlgorithm();

    ~FeatureGroupingAlgorithm() override;

    virtual void group(const std::vector<FeatureMap > & maps, ConsensusMap & out) = 0;

    virtual void group(const std::vector<ConsensusMap> & maps, ConsensusMap & out);

    void transferSubelements(const std::vector<ConsensusMap> & maps, ConsensusMap & out) const;

    static void registerChildren();

private:
    FeatureGroupingAlgorithm(const FeatureGroupingAlgorithm &);
    FeatureGroupingAlgorithm & operator=(const FeatureGroupingAlgorithm &);

  };

} // namespace OpenMS