Fitter1D.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Timo Sachsenberg $
// $Authors: $
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#pragma once

#include <OpenMS/DATASTRUCTURES/IsotopeCluster.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/Feature.h>
#include <OpenMS/KERNEL/Peak1D.h>
#include <OpenMS/MATH/STATISTICS/BasicStatistics.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h>

namespace OpenMS
{
  class InterpolationModel;

  class OPENMS_DLLAPI Fitter1D :
    public DefaultParamHandler,
    public FeatureFinderDefs
  {
public:

    typedef IsotopeCluster::IndexSet IndexSet;
    typedef IsotopeCluster::ChargedIndexSet ChargedIndexSet;
    typedef Feature::CoordinateType CoordinateType;
    typedef Feature::QualityType QualityType;
    typedef Peak1D PeakType;
    typedef std::vector<PeakType> RawDataArrayType;
    typedef RawDataArrayType::iterator PeakIterator;

    Fitter1D();

    Fitter1D(const Fitter1D& source);

    ~Fitter1D() override
    {
    }

    virtual Fitter1D& operator=(const Fitter1D& source);

    virtual QualityType fit1d(const RawDataArrayType& /* range */, InterpolationModel*& /* model */);

    static void registerChildren();

protected:

    CoordinateType tolerance_stdev_box_;    
    Math::BasicStatistics<> statistics_;
    CoordinateType interpolation_step_;

    void updateMembers_() override;

  };

}