IBSpectraFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Stephan Aiche $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/config.h>
#include <OpenMS/DATASTRUCTURES/StringListUtils.h>

// boost shared_ptr
#include <boost/shared_ptr.hpp>

namespace OpenMS
{

  // forward declaration
  class ConsensusMap;
  class String;
  class IsobaricQuantitationMethod;
  class AASequence;
  
  class OPENMS_DLLAPI IBSpectraFile
  {
public:
    IBSpectraFile();

    IBSpectraFile(const IBSpectraFile& other);

    IBSpectraFile& operator=(const IBSpectraFile& rhs);

    void store(const String& filename, const ConsensusMap& cm);
private:

    boost::shared_ptr<IsobaricQuantitationMethod> guessExperimentType_(const ConsensusMap& cm);

    StringList constructHeader_(const IsobaricQuantitationMethod& quantMethod);
    
    String getModifString_(const AASequence& sequence);
  };

}