IDRipper.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
//
// This software is released under a three-clause BSD license:
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//  * Redistributions in binary form must reproduce the above copyright
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//    may be used to endorse or promote products derived from this software
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// For a full list of authors, refer to the file AUTHORS.
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Immanuel Luhn $
// --------------------------------------------------------------------------
#pragma once

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/ProteinIdentification.h>


namespace OpenMS
{
  class OPENMS_DLLAPI IDRipper :
    public DefaultParamHandler
  {
public:

    IDRipper();

    ~IDRipper() override;

    void rip(std::map<String, std::pair<std::vector<ProteinIdentification>, std::vector<PeptideIdentification> > > & ripped, std::vector<ProteinIdentification> & proteins, std::vector<PeptideIdentification> & peptides);

private:

    //Not implemented
    IDRipper(const IDRipper & rhs);

    // Not implemented
    IDRipper & operator=(const IDRipper & rhs);

    void getProteinHits_(std::vector<ProteinHit> & result, const std::vector<ProteinHit> & protein_hits, const std::vector<String> & protein_accessions);
    void getProteinAccessions_(std::vector<String> & result, const std::vector<PeptideHit> & peptide_hits);
    void getProteinIdentification_(ProteinIdentification & result, PeptideIdentification pep_ident, std::vector<ProteinIdentification> & prot_idents);
  };

} // namespace OpenMS