MRMFragmentSelection.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Andreas Bertsch $
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#pragma once

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/StandardTypes.h>

#include <vector>

namespace OpenMS
{
  class OPENMS_DLLAPI MRMFragmentSelection :
    public DefaultParamHandler
  {

public:

    MRMFragmentSelection();

    MRMFragmentSelection(const MRMFragmentSelection & rhs);

    ~MRMFragmentSelection() override;

    MRMFragmentSelection & operator=(const MRMFragmentSelection & rhs);

    void selectFragments(std::vector<Peak1D> & selected_peaks, const PeakSpectrum & spec);

protected:

    bool peakselectionIsAllowed_(const String& name, const int charge);
  };
}