ModificationDefinition.h

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// $Maintainer: Timo Sachsenberg $
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#pragma once

#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/CHEMISTRY/ResidueModification.h>

namespace OpenMS
{
  class OPENMS_DLLAPI ModificationDefinition
  {
public:

    ModificationDefinition();

    ModificationDefinition(const ModificationDefinition& rhs);

    explicit ModificationDefinition(const String& mod, bool fixed = true, UInt max_occur = 0);

    explicit ModificationDefinition(const ResidueModification& mod, bool fixed = true, UInt max_occur = 0);

    virtual ~ModificationDefinition();

    void setFixedModification(bool fixed);

    bool isFixedModification() const;

    void setMaxOccurrences(UInt num);

    UInt getMaxOccurrences() const;

    String getModificationName() const;

    void setModification(const String& modification);

    const ResidueModification& getModification() const;

    ModificationDefinition& operator=(const ModificationDefinition& element);

    bool operator==(const ModificationDefinition& rhs) const;

    bool operator!=(const ModificationDefinition& rhs) const;

    bool operator<(const OpenMS::ModificationDefinition&) const;

protected:

    const ResidueModification* mod_;

    bool fixed_modification_;

    UInt max_occurrences_;
  };

} // namespace OpenMS