MzQuantMLFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
//
// This software is released under a three-clause BSD license:
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// $Maintainer: Mathias Walzer $
// $Authors: Mathias Walzer $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/FORMAT/XMLFile.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/StringListUtils.h>
#include <OpenMS/METADATA/MSQuantifications.h>

namespace OpenMS
{
  class OPENMS_DLLAPI MzQuantMLFile :
    public Internal::XMLFile,
    public ProgressLogger
  {
public:
    MzQuantMLFile();
    ~MzQuantMLFile() override;

    void load(const String & filename, MSQuantifications & msq);

    void store(const String & filename, const MSQuantifications & cmsq) const;

    //~ this is not overwritten, XMLFile version works fine
    //~ bool isValid(const String& filename, std::ostream& os = std::cerr);

    bool isSemanticallyValid(const String & filename, StringList & errors, StringList & warnings);

private:

  };

} // namespace OpenMS