ProteinInference.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Chris Bielow $
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#pragma once

#include <OpenMS/KERNEL/Peak2D.h>

#include <vector>

namespace OpenMS
{

  class PeptideHit;
  class ConsensusMap;

  class OPENMS_DLLAPI ProteinInference
  {

public:

    typedef Peak2D::IntensityType IntensityType;

    ProteinInference();

    ProteinInference(const ProteinInference& cp);

    ProteinInference& operator=(const ProteinInference& rhs);

    void infer(ConsensusMap& consensus_map, const UInt reference_map);


protected:

    void infer_(ConsensusMap& consensus_map,
                const size_t protein_idenfication_index,
                const UInt reference_map);

    bool sortByUnique_(std::vector<PeptideHit>& peptide_hits_local, const bool is_higher_score_better);

  }; // !class

} // !namespace