RNPxlMarkerIonExtractor.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg $
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#pragma once

#include <OpenMS/KERNEL/StandardTypes.h>

#include <map>
#include <vector>

namespace OpenMS
{
  class String;

  struct OPENMS_DLLAPI RNPxlMarkerIonExtractor
  {
    // name to mass-intensity pair
    typedef std::map<String, std::vector<std::pair<double, double> > > MarkerIonsType;
  
    // extract an annotate RNA marker ions
    static MarkerIonsType extractMarkerIons(const PeakSpectrum& s, const double marker_tolerance);
  };
}