RawTandemMSSignalSimulation.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Stephan Aiche, Chris Bielow, Sandro Andreotti $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/SIMULATION/SimTypes.h>

namespace OpenMS
{

  class OPENMS_DLLAPI RawTandemMSSignalSimulation :
    public DefaultParamHandler
  {
public:


    RawTandemMSSignalSimulation();

    explicit RawTandemMSSignalSimulation(SimTypes::MutableSimRandomNumberGeneratorPtr rng);

    RawTandemMSSignalSimulation(const RawTandemMSSignalSimulation& source);

    ~RawTandemMSSignalSimulation() override;

    RawTandemMSSignalSimulation& operator=(const RawTandemMSSignalSimulation& source);


    void generateRawTandemSignals(const SimTypes::FeatureMapSim&, SimTypes::MSSimExperiment&, SimTypes::MSSimExperiment&);


protected:

    void initParam_();

    void generateMSESpectra_(const SimTypes::FeatureMapSim& features, const SimTypes::MSSimExperiment& experiment, SimTypes::MSSimExperiment& ms2);

    void generatePrecursorSpectra_(const SimTypes::FeatureMapSim& features, const SimTypes::MSSimExperiment& experiment, SimTypes::MSSimExperiment& ms2);

    SimTypes::MutableSimRandomNumberGeneratorPtr  rnd_gen_;
  };

}