SpectrumHelpers.h

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// $Maintainer: Hannes Roest $
// $Authors: Hannes Roest, Witold Wolski $
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#pragma once

#include <OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h>
#include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>

namespace OpenSwath
{


//integrate Window
  OPENSWATHALGO_DLLAPI bool integrateWindow(const OpenSwath::SpectrumPtr spectrum, double mz_start,
                                            double mz_end, double& mz, double& intensity, bool centroided = false);

//integrate Window
  OPENSWATHALGO_DLLAPI void integrateWindows(const OpenSwath::SpectrumPtr spectrum, 
                                             const std::vector<double>& windowsCenter, 
                                             double width,
                                             std::vector<double>& integratedWindowsIntensity,
                                             std::vector<double>& integratedWindowsMZ, bool remZero = false);

}