StatisticFunctions.h File Reference

#include <vector>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/Types.h>
#include <boost/accumulators/accumulators.hpp>
#include <boost/accumulators/statistics/covariance.hpp>
#include <boost/accumulators/statistics/mean.hpp>
#include <boost/accumulators/statistics/stats.hpp>
#include <boost/accumulators/statistics/variance.hpp>
#include <boost/accumulators/statistics/variates/covariate.hpp>
#include <boost/function/function_base.hpp>
#include <boost/lambda/casts.hpp>
#include <boost/lambda/lambda.hpp>
#include <iterator>
#include <algorithm>

Go to the source code of this file.

Classes
struct	SummaryStatistics< T >
	Helper class to gather (and dump) some statistics from a e.g. vector<double>. More...

Namespaces
	OpenMS
	Main OpenMS namespace.
	OpenMS::Math
	Math namespace.

Functions
template<typename IteratorType >
static void	checkIteratorsNotNULL (IteratorType begin, IteratorType end)
	Helper function checking if two iterators are not equal. More...
template<typename IteratorType >
static void	checkIteratorsEqual (IteratorType begin, IteratorType end)
	Helper function checking if two iterators are equal. More...
template<typename IteratorType1 , typename IteratorType2 >
static void	checkIteratorsAreValid (IteratorType1 begin_b, IteratorType1 end_b, IteratorType2 begin_a, IteratorType2 end_a)
	Helper function checking if an iterator and a co-iterator both have a next element. More...
template<typename IteratorType >
static double	sum (IteratorType begin, IteratorType end)
	Calculates the sum of a range of values. More...
template<typename IteratorType >
static double	mean (IteratorType begin, IteratorType end)
	Calculates the mean of a range of values. More...
template<typename IteratorType >
static double	median (IteratorType begin, IteratorType end, bool sorted=false)
	Calculates the median of a range of values. More...
template<typename IteratorType >
double	MAD (IteratorType begin, IteratorType end, double median_of_numbers)
	median absolute deviation (MAD) More...
template<typename IteratorType >
static double	quantile1st (IteratorType begin, IteratorType end, bool sorted=false)
	Calculates the first quantile of a range of values. More...
template<typename IteratorType >
static double	quantile3rd (IteratorType begin, IteratorType end, bool sorted=false)
	Calculates the third quantile of a range of values. More...
template<typename IteratorType >
static double	variance (IteratorType begin, IteratorType end, double mean=std::numeric_limits< double >::max())
	Calculates the variance of a range of values. More...
template<typename IteratorType >
static double	sd (IteratorType begin, IteratorType end, double mean=std::numeric_limits< double >::max())
	Calculates the standard deviation of a range of values. More...
template<typename IteratorType >
static double	absdev (IteratorType begin, IteratorType end, double mean=std::numeric_limits< double >::max())
	Calculates the absolute deviation of a range of values. More...
template<typename IteratorType1 , typename IteratorType2 >
static double	covariance (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
	Calculates the covariance of two ranges of values. More...
template<typename IteratorType1 , typename IteratorType2 >
static double	meanSquareError (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
	Calculates the mean square error for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename IteratorType1 , typename IteratorType2 >
static double	classificationRate (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
	Calculates the classification rate for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename IteratorType1 , typename IteratorType2 >
static double	matthewsCorrelationCoefficient (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
	Calculates the Matthews correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename IteratorType1 , typename IteratorType2 >
static double	pearsonCorrelationCoefficient (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
	Calculates the Pearson correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename Value >
static void	computeRank (std::vector< Value > &w)
	Replaces the elements in vector w by their ranks. More...
template<typename IteratorType1 , typename IteratorType2 >
static double	rankCorrelationCoefficient (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
	calculates the rank correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) More...