38 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h> double getInitialTrTolerance()
Definition: SuperHirnParameters.h:421
double getLowIntensityMSSignalThreshold()
Definition: SuperHirnParameters.h:441
int getBackgroundIntensityBinsMinBinCount()
Definition: SuperHirnParameters.h:249
double getMassTolPpm()
Definition: SuperHirnParameters.h:356
std::map< int, float > * getScanTRIndex()
Definition: SuperHirnParameters.h:304
bool centroidDataModus_
Definition: SuperHirnParameters.h:170
double maxFeatureMZ_
Definition: SuperHirnParameters.h:154
int getMinNbClusterMembers()
Definition: SuperHirnParameters.h:299
double getToleranceMZ()
Definition: SuperHirnParameters.h:289
double getMinTR()
Definition: SuperHirnParameters.h:254
double getPercentageIntensityElutionBorderVariation()
Definition: SuperHirnParameters.h:431
double ms1PeakAreaTrResolution_
Definition: SuperHirnParameters.h:201
double getMinFeatureMZ()
Definition: SuperHirnParameters.h:264
void setInitIsotopeDist()
Definition: SuperHirnParameters.h:411
SuperHirn parameters singleton class containing all static configuration variables.
Definition: SuperHirnParameters.h:47
double backgroundIntensityBinsIntens_
Definition: SuperHirnParameters.h:148
double getMs1PeakAreaTrResolution()
Definition: SuperHirnParameters.h:416
float intensityThreshold_
Definition: SuperHirnParameters.h:158
bool createFeatureElutionProfiles()
Definition: SuperHirnParameters.h:396
static SuperHirnParameters * instance_
Definition: SuperHirnParameters.h:143
double getTrTol()
Definition: SuperHirnParameters.h:381
bool initIsotopeDist_
Definition: SuperHirnParameters.h:208
double getMs1FeatureMergingTrTolerance()
Definition: SuperHirnParameters.h:426
double detectableIsotopeFactor_
Definition: SuperHirnParameters.h:184
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
double massTolPpm_
Definition: SuperHirnParameters.h:187
static bool haveInstance_
Definition: SuperHirnParameters.h:144
double percentageIntensityElutionBorderVariation_
Definition: SuperHirnParameters.h:204
double ms1TRResolution_
Definition: SuperHirnParameters.h:169
bool storeAllLowProbabilityMS2Scans()
Definition: SuperHirnParameters.h:391
double minTR_
Definition: SuperHirnParameters.h:151
double backgroundIntensityBinsMZ_
Definition: SuperHirnParameters.h:147
double getMassTolDa()
Definition: SuperHirnParameters.h:361
int minFeatureChrg_
Definition: SuperHirnParameters.h:155
double getMaxTR()
Definition: SuperHirnParameters.h:259
double getDetectableIsotopeFactor()
Definition: SuperHirnParameters.h:346
bool createFeatureElutionProfiles_
Definition: SuperHirnParameters.h:198
double mzTolPpm_
Definition: SuperHirnParameters.h:193
double initialTrTolerance_
Definition: SuperHirnParameters.h:202
double getIntensityCV()
Definition: SuperHirnParameters.h:351
double ppmToleranceForMZClustering_
Definition: SuperHirnParameters.h:205
SuperHirnParameters & operator=(const SuperHirnParameters &)
Definition: SuperHirnParameters.h:218
double intensityFloor_
Definition: SuperHirnParameters.h:190
double lowIntensityMSSignalThreshold_
Definition: SuperHirnParameters.h:207
double maxInterScanRetentionTimeDistance_
Definition: SuperHirnParameters.h:160
double getMinIntensity()
Definition: SuperHirnParameters.h:366
double getMaxInterScanRetentionTimeDistance()
Definition: SuperHirnParameters.h:294
int minNbClusterMembers_
Definition: SuperHirnParameters.h:161
double getIntensityFloor()
Definition: SuperHirnParameters.h:371
int backgroundIntensityBinsMinBinCount_
Definition: SuperHirnParameters.h:149
double trTol_
Definition: SuperHirnParameters.h:194
int maxFeatureChrg_
Definition: SuperHirnParameters.h:156
double getMaxFeatureMZ()
Definition: SuperHirnParameters.h:269
float getIntensityThreshold()
Definition: SuperHirnParameters.h:284
int getMinFeatureChrg()
Definition: SuperHirnParameters.h:274
bool storeAllLowProbabilityMS2Scans_
Definition: SuperHirnParameters.h:196
double maxTR_
Definition: SuperHirnParameters.h:152
double getBackgroundIntensityBinsTR()
Definition: SuperHirnParameters.h:234
int centroidWindowWidth_
Definition: SuperHirnParameters.h:171
double minFeatureMZ_
Definition: SuperHirnParameters.h:153
double getBackgroundIntensityBinsMZ()
Definition: SuperHirnParameters.h:239
bool ms1FeatureClustering_
Definition: SuperHirnParameters.h:199
int getMaxFeatureChrg()
Definition: SuperHirnParameters.h:279
double getMS1TRResolution()
Definition: SuperHirnParameters.h:331
double backgroundIntensityBinsTR_
Definition: SuperHirnParameters.h:146
A facade for various Superhirn FeatureFinder classes. Use FeatureFinderAlgorithmSH instead...
Definition: FeatureFinderAlgorithmSHCtrl.h:55
static SuperHirnParameters * instance()
Definition: SuperHirnParameters.h:223
bool centroidDataModus()
Definition: SuperHirnParameters.h:336
bool ms1FeatureClustering()
Definition: SuperHirnParameters.h:401
double peptideProbabilityThreshold_
Definition: SuperHirnParameters.h:195
double getBackgroundIntensityBinsIntens()
Definition: SuperHirnParameters.h:244
double toleranceMZ_
Definition: SuperHirnParameters.h:159
int getCentroidWindowWidth()
Definition: SuperHirnParameters.h:341
double getMzTolPpm()
Definition: SuperHirnParameters.h:376
double getPeptideProbabilityThreshold()
Definition: SuperHirnParameters.h:386
double minIntensity_
Definition: SuperHirnParameters.h:189
double ms1FeatureMergingTrTolerance_
Definition: SuperHirnParameters.h:203
bool isInitIsotopeDist()
Definition: SuperHirnParameters.h:406
std::map< int, float > scanTRIndex_
Definition: SuperHirnParameters.h:163
double massTolDa_
Definition: SuperHirnParameters.h:188
double intensityCV_
Definition: SuperHirnParameters.h:185
double getPpmToleranceForMZClustering()
Definition: SuperHirnParameters.h:436