OpenMS
2.4.0
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Extracts 'n' peptides randomly or best 'n' from idXML files.
Input and output format are 'idXML'. The tools allows you to extract subsets of peptides from idXML files.
The command line parameters of this tool are:
IDExtractor -- Extracts 'n' peptides randomly or best 'n' from idXML files. Version: 2.4.0 Oct 29 2018, 15:52:19, Revision: 9690d06 To cite OpenMS: Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959. Usage: IDExtractor <options> Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'idXML') -out <file>* Output file (valid formats: 'idXML') -number_of_peptides <int> Number of randomly chosen peptides (default: '10' min: '1') -number_of_rand_invokations <int> Number of rand invocations before random draw (default: '0' min: '0') -best_hits If this flag is set the best n peptides are chosen. Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool: