OpenMS
2.4.0
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Splits protein/peptide identifications off of annotated data files.
This performs the reverse operation as IDMapper.
The command line parameters of this tool are:
IDSplitter -- Splits protein/peptide identifications off of annotated data files Version: 2.4.0 Oct 29 2018, 15:52:19, Revision: 9690d06 To cite OpenMS: Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959. Usage: IDSplitter <options> Options (mandatory options marked with '*'): -in <file>* Input file (data annotated with identifications) (valid formats: 'mzML', 'featureXML', 'consensusXML') -out <file> Output file (data without identifications). Either 'out' or 'id_out' are required. They can be used together. (valid formats: 'mzML', 'featureXML', 'consensusXML') -id_out <file> Output file (identifications). Either 'out' or 'id_out' are required. They can be used together. (valid formats: 'idXML') Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool: