TransformationEvaluation

Applies a transformation to a range of values and records the results.

This is useful for plotting transformations for quality assessment etc.

The command line parameters of this tool are:

TransformationEvaluation -- Applies a transformation to a range of values
Version: 2.4.0 Oct 29 2018, 15:52:19, Revision: 9690d06
To cite OpenMS:
  Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

Usage:
  TransformationEvaluation <options>

Options (mandatory options marked with '*'):
  -in <file>*        Input file containing the transformation description (valid formats: 'trafoXML')
  -out <file>        Output file containing original and transformed values; if empty, output is written to 
                     the screen (valid formats: 'trafoXML')
  -min <value>       Minimum value to transform (default: '0')
  -max <value>       Maximum value to transform (if at or below 'min', select a suitable maximum based on 
                     the transformation description) (default: '0')
  -step <value>      Step size between 'min' and 'max' (default: '1' min: '0.001')
                     
Common UTIL options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+TransformationEvaluationApplies a transformation to a range of values

version2.4.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'TransformationEvaluation'

in Input file containing the transformation descriptioninput file*.trafoXML

out Output file containing original and transformed values; if empty, output is written to the screenoutput file*.trafoXML

min0 Minimum value to transform

max0 Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)

step1 Step size between 'min' and 'max'0.001:∞

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

forcefalse Overwrite tool specific checks.true,false

testfalse Enables the test mode (needed for internal use only)true,false