| AccurateMassSearchEngine() | AccurateMassSearchEngine | |
| annotate_(const std::vector< AccurateMassSearchResult > &, BaseFeature &) const | AccurateMassSearchEngine | private |
| check_defaults_ | DefaultParamHandler | protected |
| CMD enum value | ProgressLogger | |
| computeCosineSim_(const std::vector< double > &x, const std::vector< double > &y) const | AccurateMassSearchEngine | private |
| computeIsotopePatternSimilarity_(const Feature &feat, const EmpiricalFormula &form) const | AccurateMassSearchEngine | private |
| current_logger_ | ProgressLogger | mutableprotected |
| database_name_ | AccurateMassSearchEngine | private |
| database_version_ | AccurateMassSearchEngine | private |
| db_mapping_file_ | AccurateMassSearchEngine | private |
| db_struct_file_ | AccurateMassSearchEngine | private |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| exportMzTab_(const QueryResultsTable &overall_results, const Size number_of_maps, MzTab &mztab_out) const | AccurateMassSearchEngine | private |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| hmdb_properties_mapping_ | AccurateMassSearchEngine | private |
| HMDBPropsMapping typedef | AccurateMassSearchEngine | private |
| init() | AccurateMassSearchEngine | |
| ion_mode_ | AccurateMassSearchEngine | private |
| is_initialized_ | AccurateMassSearchEngine | private |
| iso_similarity_ | AccurateMassSearchEngine | private |
| keep_unidentified_masses_ | AccurateMassSearchEngine | private |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| mass_error_unit_ | AccurateMassSearchEngine | private |
| mass_error_value_ | AccurateMassSearchEngine | private |
| mass_mappings_ | AccurateMassSearchEngine | private |
| MassIDMapping typedef | AccurateMassSearchEngine | private |
| neg_adducts_ | AccurateMassSearchEngine | private |
| neg_adducts_fname_ | AccurateMassSearchEngine | private |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| parseAdductsFile_(const String &filename, std::vector< AdductInfo > &result) | AccurateMassSearchEngine | private |
| parseMappingFile_(const StringList &) | AccurateMassSearchEngine | private |
| parseStructMappingFile_(const StringList &) | AccurateMassSearchEngine | private |
| pos_adducts_ | AccurateMassSearchEngine | private |
| pos_adducts_fname_ | AccurateMassSearchEngine | private |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| queryByConsensusFeature(const ConsensusFeature &cfeat, const Size &cf_index, const Size &number_of_maps, const String &ion_mode, std::vector< AccurateMassSearchResult > &results) const | AccurateMassSearchEngine | |
| queryByFeature(const Feature &feature, const Size &feature_index, const String &ion_mode, std::vector< AccurateMassSearchResult > &results) const | AccurateMassSearchEngine | |
| queryByMZ(const double &observed_mz, const Int &observed_charge, const String &ion_mode, std::vector< AccurateMassSearchResult > &results) const | AccurateMassSearchEngine | |
| QueryResultsTable typedef | AccurateMassSearchEngine | private |
| recursion_depth_ | ProgressLogger | protectedstatic |
| resolveAutoMode_(const MAPTYPE &map) const | AccurateMassSearchEngine | inlineprivate |
| run(FeatureMap &, MzTab &) const | AccurateMassSearchEngine | |
| run(ConsensusMap &, MzTab &) const | AccurateMassSearchEngine | |
| searchMass_(double neutral_query_mass, double diff_mass, std::pair< Size, Size > &hit_indices) const | AccurateMassSearchEngine | private |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| type_ | ProgressLogger | mutableprotected |
| updateMembers_() override | AccurateMassSearchEngine | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| ~AccurateMassSearchEngine() override | AccurateMassSearchEngine | |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~ProgressLogger() | ProgressLogger | |
1.8.14