OpenMS
2.4.0
OpenMS
ConsensusMap
ConsensusMap Member List
This is the complete list of members for
ConsensusMap
, including all inherited members.
appendColumns
(const ConsensusMap &rhs)
ConsensusMap
appendRows
(const ConsensusMap &rhs)
ConsensusMap
applyMemberFunction
(Size(Type::*member_function)())
ConsensusMap
inline
applyMemberFunction
(Size(Type::*member_function)() const) const
ConsensusMap
inline
Base
typedef
ConsensusMap
clear
(bool clear_meta_data=true)
ConsensusMap
clearMetaInfo
()
MetaInfoInterface
clearRanges
()
RangeManager< 2 >
inline
clearUniqueId
()
UniqueIdInterface
inline
column_description_
ConsensusMap
protected
ColumnHeaders
typedef
ConsensusMap
ConsensusMap
()
ConsensusMap
ConsensusMap
(const ConsensusMap &source)
ConsensusMap
ConsensusMap
(Base::size_type n)
ConsensusMap
explicit
ConstIterator
typedef
ConsensusMap
ConstReverseIterator
typedef
ConsensusMap
createIfNotExists_
()
MetaInfoInterface
inline
protected
data_processing_
ConsensusMap
protected
DIMENSION
enum value
RangeManager< 2 >
DocumentIdentifier
()
DocumentIdentifier
DocumentIdentifier
(const DocumentIdentifier &source)
DocumentIdentifier
ensureUniqueId
()
UniqueIdInterface
inline
experiment_type_
ConsensusMap
protected
file_path_
DocumentIdentifier
protected
file_type_
DocumentIdentifier
protected
getBase_
() const
UniqueIdIndexer< ConsensusMap >
inline
protected
getBase_
()
UniqueIdIndexer< ConsensusMap >
inline
protected
getColumnHeaders
() const
ConsensusMap
getColumnHeaders
()
ConsensusMap
getDataProcessing
() const
ConsensusMap
getDataProcessing
()
ConsensusMap
getExperimentType
() const
ConsensusMap
getIdentifier
() const
DocumentIdentifier
getKeys
(std::vector< String > &keys) const
MetaInfoInterface
getKeys
(std::vector< UInt > &keys) const
MetaInfoInterface
getLoadedFilePath
() const
DocumentIdentifier
getLoadedFileType
() const
DocumentIdentifier
getMax
() const
RangeManager< 2 >
inline
getMaxInt
() const
RangeManager< 2 >
inline
getMetaValue
(const String &name) const
MetaInfoInterface
getMetaValue
(UInt index) const
MetaInfoInterface
getMin
() const
RangeManager< 2 >
inline
getMinInt
() const
RangeManager< 2 >
inline
getPrimaryMSRunPath
(StringList &toFill) const
ConsensusMap
getProteinIdentifications
() const
ConsensusMap
getProteinIdentifications
()
ConsensusMap
getUnassignedPeptideIdentifications
() const
ConsensusMap
getUnassignedPeptideIdentifications
()
ConsensusMap
getUniqueId
() const
UniqueIdInterface
inline
hasInvalidUniqueId
() const
UniqueIdInterface
inline
hasValidUniqueId
() const
UniqueIdInterface
inline
id_
DocumentIdentifier
protected
int_range_
RangeManager< 2 >
protected
IntensityRangeType
typedef
RangeManager< 2 >
INVALID
enum value
UniqueIdInterface
isMapConsistent
(Logger::LogStream *stream=nullptr) const
ConsensusMap
isMetaEmpty
() const
MetaInfoInterface
isValid
(UInt64 unique_id)
UniqueIdInterface
inline
static
Iterator
typedef
ConsensusMap
meta_
MetaInfoInterface
protected
MetaInfoInterface
()
MetaInfoInterface
MetaInfoInterface
(const MetaInfoInterface &rhs)
MetaInfoInterface
metaRegistry
()
MetaInfoInterface
static
metaValueExists
(const String &name) const
MetaInfoInterface
metaValueExists
(UInt index) const
MetaInfoInterface
operator!=
(const ConsensusMap &rhs) const
ConsensusMap
OpenMS::MetaInfoInterface::operator!=
(const MetaInfoInterface &rhs) const
MetaInfoInterface
RangeManager< 2 >::operator!=
(const RangeManager &rhs) const
RangeManager< 2 >
inline
operator=
(const ConsensusMap &source)
ConsensusMap
OpenMS::MetaInfoInterface::operator=
(const MetaInfoInterface &rhs)
MetaInfoInterface
RangeManager< 2 >::operator=
(const RangeManager &rhs)
RangeManager< 2 >
inline
OpenMS::DocumentIdentifier::operator=
(const DocumentIdentifier &source)
DocumentIdentifier
OpenMS::UniqueIdInterface::operator=
(UniqueIdInterface const &rhs)
UniqueIdInterface
inline
operator==
(const ConsensusMap &rhs) const
ConsensusMap
OpenMS::MetaInfoInterface::operator==
(const MetaInfoInterface &rhs) const
MetaInfoInterface
RangeManager< 2 >::operator==
(const RangeManager &rhs) const
RangeManager< 2 >
inline
OpenMS::DocumentIdentifier::operator==
(const DocumentIdentifier &rhs) const
DocumentIdentifier
OpenMS::UniqueIdInterface::operator==
(UniqueIdInterface const &rhs) const
UniqueIdInterface
inline
pos_range_
RangeManager< 2 >
protected
PositionRangeType
typedef
RangeManager< 2 >
PositionType
typedef
RangeManager< 2 >
privvec
typedef
ConsensusMap
protein_identifications_
ConsensusMap
protected
RangeManager
()
RangeManager< 2 >
inline
RangeManager
(const RangeManager &rhs)
RangeManager< 2 >
inline
RangeManagerType
typedef
ConsensusMap
removeMetaValue
(const String &name)
MetaInfoInterface
removeMetaValue
(UInt index)
MetaInfoInterface
resolveUniqueIdConflicts
()
UniqueIdIndexer< ConsensusMap >
inline
ReverseIterator
typedef
ConsensusMap
setColumnHeaders
(const ColumnHeaders &column_description)
ConsensusMap
setDataProcessing
(const std::vector< DataProcessing > &processing_method)
ConsensusMap
setExperimentType
(const String &experiment_type)
ConsensusMap
setIdentifier
(const String &id)
DocumentIdentifier
setLoadedFilePath
(const String &file_name)
DocumentIdentifier
setLoadedFileType
(const String &file_name)
DocumentIdentifier
setMetaValue
(const String &name, const DataValue &value)
MetaInfoInterface
setMetaValue
(UInt index, const DataValue &value)
MetaInfoInterface
setPrimaryMSRunPath
(const StringList &s)
ConsensusMap
setProteinIdentifications
(const std::vector< ProteinIdentification > &protein_identifications)
ConsensusMap
setUnassignedPeptideIdentifications
(const std::vector< PeptideIdentification > &unassigned_peptide_identifications)
ConsensusMap
setUniqueId
()
UniqueIdInterface
inline
setUniqueId
(UInt64 rhs)
UniqueIdInterface
inline
setUniqueId
(const String &rhs)
UniqueIdInterface
sortByIntensity
(bool reverse=false)
ConsensusMap
sortByMaps
()
ConsensusMap
sortByMZ
()
ConsensusMap
sortByPosition
()
ConsensusMap
sortByQuality
(bool reverse=false)
ConsensusMap
sortByRT
()
ConsensusMap
sortBySize
()
ConsensusMap
sortPeptideIdentificationsByMapIndex
()
ConsensusMap
swap
(ConsensusMap &from)
ConsensusMap
OpenMS::DocumentIdentifier::swap
(DocumentIdentifier &from)
DocumentIdentifier
OpenMS::UniqueIdInterface::swap
(UniqueIdInterface &from)
UniqueIdInterface
inline
UniqueIdIndexer< ConsensusMap >::swap
(UniqueIdIndexer &rhs)
UniqueIdIndexer< ConsensusMap >
inline
unassigned_peptide_identifications_
ConsensusMap
protected
unique_id_
UniqueIdInterface
protected
uniqueid_to_index_
UniqueIdIndexer< ConsensusMap >
mutable
protected
UniqueIdInterface
()
UniqueIdInterface
inline
UniqueIdInterface
(const UniqueIdInterface &rhs)
UniqueIdInterface
inline
UniqueIdMap
typedef
UniqueIdIndexer< ConsensusMap >
uniqueIdToIndex
(UInt64 unique_id) const
UniqueIdIndexer< ConsensusMap >
inline
updateRanges
() override
ConsensusMap
virtual
updateRanges_
(const PeakIteratorType &begin, const PeakIteratorType &end)
RangeManager< 2 >
inline
protected
updateUniqueIdToIndex
() const
UniqueIdIndexer< ConsensusMap >
inline
~ConsensusMap
() override
ConsensusMap
~DocumentIdentifier
()
DocumentIdentifier
virtual
~MetaInfoInterface
()
MetaInfoInterface
~RangeManager
()
RangeManager< 2 >
inline
virtual
~UniqueIdInterface
()
UniqueIdInterface
inline
virtual
Generated on Mon Oct 29 2018 16:41:01 for OpenMS by
1.8.14