OpenMS  2.4.0
DIAScoring Member List

This is the complete list of members for DIAScoring, including all inherited members.

check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
dia_by_ion_score(SpectrumPtrType spectrum, AASequence &sequence, int charge, double &bseries_score, double &yseries_score)DIAScoring
dia_byseries_intensity_min_DIAScoringprivate
dia_byseries_ppm_diff_DIAScoringprivate
dia_centroided_DIAScoringprivate
dia_extract_window_DIAScoringprivate
dia_extraction_ppm_DIAScoringprivate
dia_isotope_scores(const std::vector< TransitionType > &transitions, SpectrumPtrType spectrum, OpenSwath::IMRMFeature *mrmfeature, double &isotope_corr, double &isotope_overlap)DIAScoring
dia_massdiff_score(const std::vector< TransitionType > &transitions, SpectrumPtrType spectrum, const std::vector< double > &normalized_library_intensity, double &ppm_score, double &ppm_score_weighted)DIAScoring
dia_ms1_isotope_scores(double precursor_mz, SpectrumPtrType spectrum, size_t charge_state, double &isotope_corr, double &isotope_overlap, const std::string &sum_formula="")DIAScoring
dia_ms1_massdiff_score(double precursor_mz, SpectrumPtrType spectrum, double &ppm_score)DIAScoring
dia_nr_charges_DIAScoringprivate
dia_nr_isotopes_DIAScoringprivate
diaIsotopeScoresSub_(const std::vector< TransitionType > &transitions, SpectrumPtrType spectrum, std::map< std::string, double > &intensities, double &isotope_corr, double &isotope_overlap)DIAScoringprivate
DIAScoring()DIAScoring
DIAScoring(const DIAScoring &rhs)DIAScoringprivate
error_name_DefaultParamHandlerprotected
generatorDIAScoringprivate
getDefaults() constDefaultParamHandler
getFirstIsotopeRelativeIntensities_(const std::vector< TransitionType > &transitions, OpenSwath::IMRMFeature *mrmfeature, std::map< std::string, double > &intensities)DIAScoringprivate
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
largePeaksBeforeFirstIsotope_(SpectrumPtrType spectrum, double mono_mz, double mono_int, int &nr_occurrences, double &max_ratio)DIAScoringprivate
operator=(const DIAScoring &rhs)DIAScoringprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
peak_before_mono_max_ppm_diff_DIAScoringprivate
score_with_isotopes(SpectrumPtrType spectrum, const std::vector< TransitionType > &transitions, double &dotprod, double &manhattan)DIAScoring
scoreIsotopePattern_(double product_mz, const std::vector< double > &isotopes_int, int putative_fragment_charge, const std::string &sum_formula="")DIAScoringprivate
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
SpectrumPtrType typedefDIAScoringprivate
subsections_DefaultParamHandlerprotected
TransitionType typedefDIAScoringprivate
updateMembers_() overrideDIAScoringprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~DIAScoring() overrideDIAScoring