addSynonym(const String &synonym) | DigestionEnzyme | |
c_term_gain_ | DigestionEnzymeProtein | protected |
cleavage_regex_ | DigestionEnzyme | protected |
comet_id_ | DigestionEnzymeProtein | protected |
crux_id_ | DigestionEnzymeProtein | protected |
DigestionEnzyme(const DigestionEnzyme &enzyme) | DigestionEnzyme | |
DigestionEnzyme(const String &name, const String &cleavage_regex, const std::set< String > &synonyms=std::set< String >(), String regex_description="") | DigestionEnzyme | explicit |
DigestionEnzyme() | DigestionEnzyme | protected |
DigestionEnzymeProtein() | DigestionEnzymeProtein | |
DigestionEnzymeProtein(const DigestionEnzymeProtein &enzyme) | DigestionEnzymeProtein | |
DigestionEnzymeProtein(const String &name, const String &cleavage_regex, const std::set< String > &synonyms=std::set< String >(), String regex_description="", EmpiricalFormula n_term_gain=EmpiricalFormula("H"), EmpiricalFormula c_term_gain=EmpiricalFormula("OH"), String psi_id="", String xtandem_id="", Int comet_id=-1, String crux_id="", Int msgf_id=-1, Int omssa_id=-1) | DigestionEnzymeProtein | explicit |
getCometID() const | DigestionEnzymeProtein | |
getCruxID() const | DigestionEnzymeProtein | |
getCTermGain() const | DigestionEnzymeProtein | |
getMSGFID() const | DigestionEnzymeProtein | |
getName() const | DigestionEnzyme | |
getNTermGain() const | DigestionEnzymeProtein | |
getOMSSAID() const | DigestionEnzymeProtein | |
getPSIID() const | DigestionEnzymeProtein | |
getRegEx() const | DigestionEnzyme | |
getRegExDescription() const | DigestionEnzyme | |
getSynonyms() const | DigestionEnzyme | |
getXTandemID() const | DigestionEnzymeProtein | |
msgf_id_ | DigestionEnzymeProtein | protected |
n_term_gain_ | DigestionEnzymeProtein | protected |
name_ | DigestionEnzyme | protected |
omssa_id_ | DigestionEnzymeProtein | protected |
operator!=(const DigestionEnzymeProtein &enzyme) const | DigestionEnzymeProtein | |
operator!=(String cleavage_regex) const | DigestionEnzymeProtein | |
OpenMS::DigestionEnzyme::operator!=(const DigestionEnzyme &enzyme) const | DigestionEnzyme | |
OpenMS::DigestionEnzyme::operator!=(const String &cleavage_regex) const | DigestionEnzyme | |
operator<(const DigestionEnzymeProtein &enzyme) const | DigestionEnzymeProtein | |
OpenMS::DigestionEnzyme::operator<(const DigestionEnzyme &enzyme) const | DigestionEnzyme | |
operator<<(std::ostream &os, const DigestionEnzymeProtein &enzyme) | DigestionEnzymeProtein | friend |
operator=(const DigestionEnzymeProtein &enzyme) | DigestionEnzymeProtein | |
OpenMS::DigestionEnzyme::operator=(const DigestionEnzyme &enzyme) | DigestionEnzyme | |
operator==(const DigestionEnzymeProtein &enzyme) const | DigestionEnzymeProtein | |
operator==(String cleavage_regex) const | DigestionEnzymeProtein | |
OpenMS::DigestionEnzyme::operator==(const DigestionEnzyme &enzyme) const | DigestionEnzyme | |
OpenMS::DigestionEnzyme::operator==(const String &cleavage_regex) const | DigestionEnzyme | |
psi_id_ | DigestionEnzymeProtein | protected |
regex_description_ | DigestionEnzyme | protected |
setCometID(Int value) | DigestionEnzymeProtein | |
setCruxID(const String &value) | DigestionEnzymeProtein | |
setCTermGain(EmpiricalFormula value) | DigestionEnzymeProtein | |
setMSGFID(Int value) | DigestionEnzymeProtein | |
setName(const String &name) | DigestionEnzyme | |
setNTermGain(EmpiricalFormula value) | DigestionEnzymeProtein | |
setOMSSAID(Int value) | DigestionEnzymeProtein | |
setPSIID(String value) | DigestionEnzymeProtein | |
setRegEx(const String &cleavage_regex) | DigestionEnzyme | |
setRegExDescription(const String &value) | DigestionEnzyme | |
setSynonyms(const std::set< String > &synonyms) | DigestionEnzyme | |
setValueFromFile(const String &key, const String &value) override | DigestionEnzymeProtein | virtual |
setXTandemID(String value) | DigestionEnzymeProtein | |
synonyms_ | DigestionEnzyme | protected |
xtandem_id_ | DigestionEnzymeProtein | protected |
~DigestionEnzyme() | DigestionEnzyme | virtual |
~DigestionEnzymeProtein() override | DigestionEnzymeProtein | |