charge_lower_bound_ | FeatureFindingMetabo | private |
charge_upper_bound_ | FeatureFindingMetabo | private |
check_defaults_ | DefaultParamHandler | protected |
chrom_fwhm_ | FeatureFindingMetabo | private |
CMD enum value | ProgressLogger | |
computeAveragineSimScore_(const std::vector< double > &intensities, const double &molecular_weight) const | FeatureFindingMetabo | private |
computeCosineSim_(const std::vector< double > &, const std::vector< double > &) const | FeatureFindingMetabo | private |
computeOLSCoeff_(const std::vector< double > &, const std::vector< double > &) const | FeatureFindingMetabo | private |
current_logger_ | ProgressLogger | mutableprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
enable_RT_filtering_ | FeatureFindingMetabo | private |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | protected |
FeatureFindingMetabo() | FeatureFindingMetabo | |
findLocalFeatures_(const std::vector< const MassTrace *> &candidates, const double total_intensity, std::vector< FeatureHypothesis > &output_hypotheses) const | FeatureFindingMetabo | private |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
isLegalIsotopePattern_(const FeatureHypothesis &feat_hypo) const | FeatureFindingMetabo | private |
isotope_filt_svm_ | FeatureFindingMetabo | private |
isotope_filtering_model_ | FeatureFindingMetabo | private |
last_invoke_ | ProgressLogger | mutableprotected |
loadIsotopeModel_(const String &) | FeatureFindingMetabo | private |
local_mz_range_ | FeatureFindingMetabo | private |
local_rt_range_ | FeatureFindingMetabo | private |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
remove_single_traces_ | FeatureFindingMetabo | private |
report_chromatograms_ | FeatureFindingMetabo | private |
report_convex_hulls_ | FeatureFindingMetabo | private |
report_summed_ints_ | FeatureFindingMetabo | private |
run(std::vector< MassTrace > &input_mtraces, FeatureMap &output_featmap, std::vector< std::vector< OpenMS::MSChromatogram > > &output_chromatograms) | FeatureFindingMetabo | |
scoreMZ_(const MassTrace &, const MassTrace &, Size isotopic_position, Size charge) const | FeatureFindingMetabo | private |
scoreRT_(const MassTrace &, const MassTrace &) const | FeatureFindingMetabo | private |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | protected |
svm_feat_centers_ | FeatureFindingMetabo | private |
svm_feat_scales_ | FeatureFindingMetabo | private |
total_intensity_ | FeatureFindingMetabo | private |
type_ | ProgressLogger | mutableprotected |
updateMembers_() override | FeatureFindingMetabo | protectedvirtual |
use_mz_scoring_C13_ | FeatureFindingMetabo | private |
use_smoothed_intensities_ | FeatureFindingMetabo | private |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~FeatureFindingMetabo() override | FeatureFindingMetabo | |
~ProgressLogger() | ProgressLogger | |