OpenMS
2.4.0
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This is the complete list of members for FeatureXMLFile, including all inherited members.
accession_to_id_ | FeatureXMLFile | protected |
ActionMode enum name | XMLHandler | protected |
asBool_(const String &in) | XMLHandler | inlineprotected |
asDateTime_(String date_string) | XMLHandler | inlineprotected |
asDouble_(const String &in) | XMLHandler | inlineprotected |
asFloat_(const String &in) | XMLHandler | inlineprotected |
asInt_(const String &in) | XMLHandler | inlineprotected |
asInt_(const XMLCh *in) | XMLHandler | inlineprotected |
asUInt_(const String &in) | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
characters(const XMLCh *const chars, const XMLSize_t length) override | FeatureXMLFile | protected |
CMD enum value | ProgressLogger | |
current_chull_ | FeatureXMLFile | protected |
current_feature_ | FeatureXMLFile | protected |
current_logger_ | ProgressLogger | mutableprotected |
cv_terms_ | XMLHandler | protected |
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected |
dim_ | FeatureXMLFile | protected |
disable_parsing_ | FeatureXMLFile | protected |
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | FeatureXMLFile | protected |
endProgress() const | ProgressLogger | |
enforced_encoding_ | XMLFile | protected |
enforceEncoding_(const String &encoding) | XMLFile | protected |
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
error(const xercesc::SAXParseException &exception) override | XMLHandler | protected |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | protected |
error_message_ | XMLHandler | mutableprotected |
errorString() | XMLHandler | protected |
expected_size_ | FeatureXMLFile | protected |
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | protected |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | protected |
FeatureXMLFile() | FeatureXMLFile | |
file_ | XMLHandler | protected |
getLoadDetail() const | XMLHandler | protectedvirtual |
getLogType() const | ProgressLogger | |
getOptions() | FeatureXMLFile | |
getOptions() const | FeatureXMLFile | |
getVersion() const | XMLFile | |
GUI enum value | ProgressLogger | |
hull_position_ | FeatureXMLFile | protected |
id_identifier_ | FeatureXMLFile | protected |
identifier_id_ | FeatureXMLFile | protected |
in_description_ | FeatureXMLFile | protected |
isValid(const String &filename, std::ostream &os) | XMLFile | |
last_invoke_ | ProgressLogger | mutableprotected |
last_meta_ | FeatureXMLFile | protected |
LD_ALLDATA enum value | XMLHandler | protected |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler | protected |
LD_RAWCOUNTS enum value | XMLHandler | protected |
load(const String &filename, FeatureMap &feature_map) | FeatureXMLFile | |
LOAD enum value | XMLHandler | protected |
load_detail_ | XMLHandler | protected |
LOADDETAIL enum name | XMLHandler | protected |
loadSize(const String &filename) | FeatureXMLFile | |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
map_ | FeatureXMLFile | protected |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
open_tags_ | XMLHandler | protected |
operator=(const ProgressLogger &other) | ProgressLogger | |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
options_ | FeatureXMLFile | protected |
param_ | FeatureXMLFile | protected |
parse_(const String &filename, XMLHandler *handler) | XMLFile | protected |
parseBuffer_(const std::string &buffer, XMLHandler *handler) | XMLFile | protected |
pep_hit_ | FeatureXMLFile | protected |
pep_id_ | FeatureXMLFile | protected |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
prot_hit_ | FeatureXMLFile | protected |
prot_id_ | FeatureXMLFile | protected |
proteinid_to_accession_ | FeatureXMLFile | protected |
recursion_depth_ | ProgressLogger | protectedstatic |
reset() | XMLHandler | protected |
resetMembers_() | FeatureXMLFile | protected |
save_(const String &filename, XMLHandler *handler) const | XMLFile | protected |
schema_location_ | XMLFile | protected |
schema_version_ | XMLFile | protected |
search_param_ | FeatureXMLFile | protected |
setLoadDetail(const LOADDETAIL d) | XMLHandler | protectedvirtual |
setLogType(LogType type) const | ProgressLogger | |
setOptions(const FeatureFileOptions &) | FeatureXMLFile | |
setProgress(SignedSize value) const | ProgressLogger | |
size_only_ | FeatureXMLFile | protected |
sm_ | XMLHandler | protected |
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | FeatureXMLFile | protected |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
store(const String &filename, const FeatureMap &feature_map) | FeatureXMLFile | |
STORE enum value | XMLHandler | protected |
subordinate_feature_level_ | FeatureXMLFile | protected |
type_ | ProgressLogger | mutableprotected |
updateCurrentFeature_(bool create) | FeatureXMLFile | protected |
version_ | XMLHandler | protected |
warning(const xercesc::SAXParseException &exception) override | XMLHandler | protected |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | protected |
writeFeature_(const String &filename, std::ostream &os, const Feature &feat, const String &identifier_prefix, UInt64 identifier, UInt indentation_level) | FeatureXMLFile | protected |
writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level) | FeatureXMLFile | protected |
writeTo(std::ostream &) | XMLHandler | protectedvirtual |
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
writeXMLEscape(const String &to_escape) | XMLHandler | inlineprotectedstatic |
XMLFile() | XMLFile | |
XMLFile(const String &schema_location, const String &version) | XMLFile | |
XMLHandler(const String &filename, const String &version) | XMLHandler | protected |
~FeatureXMLFile() override | FeatureXMLFile | |
~ProgressLogger() | ProgressLogger | |
~XMLFile() | XMLFile | virtual |
~XMLHandler() override | XMLHandler | protected |