OpenMS
2.4.0
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This is the complete list of members for MascotXMLHandler, including all inherited members.
ActionMode enum name | XMLHandler | |
actual_peptide_evidence_ | MascotXMLHandler | private |
actual_peptide_hit_ | MascotXMLHandler | private |
actual_protein_hit_ | MascotXMLHandler | private |
actual_query_ | MascotXMLHandler | private |
actual_title_ | MascotXMLHandler | private |
asBool_(const String &in) | XMLHandler | inlineprotected |
asDateTime_(String date_string) | XMLHandler | inlineprotected |
asDouble_(const String &in) | XMLHandler | inlineprotected |
asFloat_(const String &in) | XMLHandler | inlineprotected |
asInt_(const String &in) | XMLHandler | inlineprotected |
asInt_(const XMLCh *in) | XMLHandler | inlineprotected |
asUInt_(const String &in) | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
character_buffer_ | MascotXMLHandler | private |
characters(const XMLCh *const chars, const XMLSize_t) override | MascotXMLHandler | |
cv_terms_ | XMLHandler | protected |
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected |
date_ | MascotXMLHandler | private |
date_time_string_ | MascotXMLHandler | private |
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | MascotXMLHandler | |
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
error(const xercesc::SAXParseException &exception) override | XMLHandler | |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
error_message_ | XMLHandler | mutableprotected |
errorString() | XMLHandler | |
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
file_ | XMLHandler | protected |
getLoadDetail() const | XMLHandler | virtual |
id_data_ | MascotXMLHandler | private |
identifier_ | MascotXMLHandler | private |
LD_ALLDATA enum value | XMLHandler | |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler | |
LD_RAWCOUNTS enum value | XMLHandler | |
LOAD enum value | XMLHandler | |
load_detail_ | XMLHandler | protected |
LOADDETAIL enum name | XMLHandler | |
lookup_ | MascotXMLHandler | private |
major_version_ | MascotXMLHandler | private |
MascotXMLHandler(ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &identifications, const String &filename, std::map< String, std::vector< AASequence > > &peptides, const SpectrumMetaDataLookup &lookup) | MascotXMLHandler | |
minor_version_ | MascotXMLHandler | private |
modified_peptides_ | MascotXMLHandler | private |
no_rt_error_ | MascotXMLHandler | private |
open_tags_ | XMLHandler | protected |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
peptide_identification_index_ | MascotXMLHandler | private |
protein_identification_ | MascotXMLHandler | private |
remove_fixed_mods_ | MascotXMLHandler | private |
reset() | XMLHandler | |
search_parameters_ | MascotXMLHandler | private |
setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual |
sm_ | XMLHandler | protected |
splitModificationBySpecifiedAA(String mod) | MascotXMLHandler | static |
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | MascotXMLHandler | |
STORE enum value | XMLHandler | |
tag_ | MascotXMLHandler | private |
tags_open_ | MascotXMLHandler | private |
version_ | XMLHandler | protected |
warning(const xercesc::SAXParseException &exception) override | XMLHandler | |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
writeTo(std::ostream &) | XMLHandler | virtual |
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic |
XMLHandler(const String &filename, const String &version) | XMLHandler | |
~MascotXMLHandler() override | MascotXMLHandler | |
~XMLHandler() override | XMLHandler |